Click here to switch to the map view.

The map label for this gene is cobD

Identifier: 115352547

GI number: 115352547

Start: 2754956

End: 2755894

Strand: Direct

Name: cobD

Synonym: Bamb_2496

Alternate gene names: 115352547

Gene position: 2754956-2755894 (Clockwise)

Preceding gene: 115352546

Following gene: 115352548

Centisome position: 77.46

GC content: 74.97

Gene sequence:

>939_bases
ATGCTGTCGCTGCCCGTCGTCGCGATGCTCGCGGTCGCGGCCGCGATCGTCGATCGCATCGTCGGCGAACCGGCCGGCTG
GCATCCGCTCGTCGCGTTCGGCCGGCTCGCCGGCCGCATCGAAGCCGCGCTGAACACGGGCCGGCGCGGCCGCGTGGTCG
GCGTCGCCGCATGGGTCGCGGCGGTGGTGCCGCCGGTTGCCATCGCCGCGTGGCTCGCGGCCGTGCTGCCCTGGCCGCTC
GCGGCCGCGCTGCACGTCGCGCTGCTGTGGTTCGCGCTCGGCGCGAAGAGCCTCGCCGATCACGTCGCCCCGATCGCCGC
CGCGCTGCTGCGGCACGATCTCGACGCCGCACGCGCGCTGACCGCGCGCATCGTGTCGCGCGACACCAGCGAAGCCGACG
AAGGCGCGCTGTCGCGCGCGGCCGTCGAATCGGCGCTCGAGAACGGCAACGACGCGATCTTCGGCGCGCTGTTCTGGTTC
GTGGTCGCCGGCGGCCCCGGCGCGCTGCTGTTCCGGCTCGCGAACACGCTCGACGCGATGTGGGGCTACCGCACGCCGCG
CTTCCTGACCTTCGGCTGGGCTGCCGCGCGCCTCGACGACGCGCTCAACTGGATTCCCGCGCGCCTCACCGCCGCGAGCT
ACGCGCTGCTCGGCGACACGGCCGCCGCGTGGCGCTGCTGGCGCACGCAGGCACGCCACTGGGACAGCCCGAACGCGGGC
CCCGTGATGGCCGCGGGCGCCGGCAGCCTGAACGTGCAGCTCGGCGGCCCGGCCGTCTATCACGGCCAAATCGAAGACCG
TCCCGCGCTCGGCACCGGCGCGAGCGCGACGGCCGTGCACGTGGTCGCCGCGCTGTCGCTCGTCACGCGCACGCTCGCGC
TGTGGCTCGCGCTGCTCGTCGCGAGCGGCGCACTCATCCTCGCTACCCATCATGTCTGA

Upstream 100 bases:

>100_bases
TCGGGCGCCTGAACCAGCGCATCGCCGCACTCGCGACCCGCGTGACGCTGCTGGTGGCCGGGCTGCCGCTCGAGCTCAAG
GCCGGAGCGCCGTCATGCTG

Downstream 100 bases:

>100_bases
CGCACGCATCCCGCACGGCGGCAACCTGCACGAAGCCGCGCGCCGCCACGGCATTCCGCACGACGACTGGCTCGACCTGT
CGACCGGCATCAATCCGATC

Product: cobalamin biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 312

Protein sequence:

>312_residues
MLSLPVVAMLAVAAAIVDRIVGEPAGWHPLVAFGRLAGRIEAALNTGRRGRVVGVAAWVAAVVPPVAIAAWLAAVLPWPL
AAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARALTARIVSRDTSEADEGALSRAAVESALENGNDAIFGALFWF
VVAGGPGALLFRLANTLDAMWGYRTPRFLTFGWAAARLDDALNWIPARLTAASYALLGDTAAAWRCWRTQARHWDSPNAG
PVMAAGAGSLNVQLGGPAVYHGQIEDRPALGTGASATAVHVVAALSLVTRTLALWLALLVASGALILATHHV

Sequences:

>Translated_312_residues
MLSLPVVAMLAVAAAIVDRIVGEPAGWHPLVAFGRLAGRIEAALNTGRRGRVVGVAAWVAAVVPPVAIAAWLAAVLPWPL
AAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARALTARIVSRDTSEADEGALSRAAVESALENGNDAIFGALFWF
VVAGGPGALLFRLANTLDAMWGYRTPRFLTFGWAAARLDDALNWIPARLTAASYALLGDTAAAWRCWRTQARHWDSPNAG
PVMAAGAGSLNVQLGGPAVYHGQIEDRPALGTGASATAVHVVAALSLVTRTLALWLALLVASGALILATHHV
>Mature_312_residues
MLSLPVVAMLAVAAAIVDRIVGEPAGWHPLVAFGRLAGRIEAALNTGRRGRVVGVAAWVAAVVPPVAIAAWLAAVLPWPL
AAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARALTARIVSRDTSEADEGALSRAAVESALENGNDAIFGALFWF
VVAGGPGALLFRLANTLDAMWGYRTPRFLTFGWAAARLDDALNWIPARLTAASYALLGDTAAAWRCWRTQARHWDSPNAG
PVMAAGAGSLNVQLGGPAVYHGQIEDRPALGTGASATAVHVVAALSLVTRTLALWLALLVASGALILATHHV

Specific function: Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group [H]

COG id: COG1270

COG function: function code H; Cobalamin biosynthesis protein CobD/CbiB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CobD/CbiB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004485 [H]

Pfam domain/function: PF03186 CobD_Cbib [H]

EC number: NA

Molecular weight: Translated: 32421; Mature: 32421

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSLPVVAMLAVAAAIVDRIVGEPAGWHPLVAFGRLAGRIEAALNTGRRGRVVGVAAWVA
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AVVPPVAIAAWLAAVLPWPLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TARIVSRDTSEADEGALSRAAVESALENGNDAIFGALFWFVVAGGPGALLFRLANTLDAM
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
WGYRTPRFLTFGWAAARLDDALNWIPARLTAASYALLGDTAAAWRCWRTQARHWDSPNAG
HCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
PVMAAGAGSLNVQLGGPAVYHGQIEDRPALGTGASATAVHVVAALSLVTRTLALWLALLV
CEEEECCCEEEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGALILATHHV
HCCCEEEEECCC
>Mature Secondary Structure
MLSLPVVAMLAVAAAIVDRIVGEPAGWHPLVAFGRLAGRIEAALNTGRRGRVVGVAAWVA
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
AVVPPVAIAAWLAAVLPWPLAAALHVALLWFALGAKSLADHVAPIAAALLRHDLDAARAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TARIVSRDTSEADEGALSRAAVESALENGNDAIFGALFWFVVAGGPGALLFRLANTLDAM
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
WGYRTPRFLTFGWAAARLDDALNWIPARLTAASYALLGDTAAAWRCWRTQARHWDSPNAG
HCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
PVMAAGAGSLNVQLGGPAVYHGQIEDRPALGTGASATAVHVVAALSLVTRTLALWLALLV
CEEEECCCEEEEEECCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGALILATHHV
HCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA