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The map label for this gene is yiaD [H]

Identifier: 115352534

GI number: 115352534

Start: 2738901

End: 2739599

Strand: Direct

Name: yiaD [H]

Synonym: Bamb_2483

Alternate gene names: 115352534

Gene position: 2738901-2739599 (Clockwise)

Preceding gene: 115352528

Following gene: 115352535

Centisome position: 77.01

GC content: 67.24

Gene sequence:

>699_bases
TTGTTTGTCGTCGTTGTCGACTCGTTCAACCAAGAAAGAGAGGAATCCAAGATGAACATGAAAATCGCGACCCGCTTGTC
CGTCTTCGCATTGGCCGGCGCATTGCTGGCAGGCTGCGCCACGCAGCAAGGCAACAACGCGGCCGTCGGCACCGGCACCG
GTGCGGCGCTGGGTGCGGGCATCGGCGCGCTGGCCGGTGGCGGCAAGGGCGCGGCGATCGGCGCAGGCGTCGGCGCACTG
GTCGGCGGCGTGACCGGCTACAACTGGCAGGCGATCAAGAACAAGCTCGCACCGTCGGCAGCGCAGACCGGCACGCAAGT
GACCGAGCAGCCGGACGGCTCGCTGAAGCTGAACGTGCCGAGCTCGGTGACCTTCGCGACGAACCAGTACGCGATCACGC
CGGCCTTCACGCCGCTGCTGAACGACCTGGCGACGACGCTGAACCAGAACCCGCAACTGACGGGATCGGTCATCGGCTAC
ACGGACAGCACGGGTTCGGCACAGCTGAACCAGACGCTGTCGCAGAACCGTGCGCAAAGCGTCGTGAACGCGCTGGCGCA
GCGCGGCGTCGCGGGCGGCCGTCTGTCGGCCCAGGGCATGGGCCCGTCGAACCCGATCGCGGACAACGCGACCGAAGCCG
GCCGTGCGCAAAACCGCCGCGTCGAGATCTACCTGCGCGCGCCGCAGCAGCATCAGTAA

Upstream 100 bases:

>100_bases
ACAGCCACGCTGGCGAACAGGGCATGCAGCCGCCTCGGCGGCTGCCGCGAGCCCGGGCCCGCCCGCCTTTGTCGGGCGCC
CGTGGTGGGAGCCGTCACTG

Downstream 100 bases:

>100_bases
GCATCGCCACGAGAGGGAATGGGGCCGTGCGCCACGCGCACAGCCCCGCCACACAAGGCTTCCAGCAGGGTCCGTAACAA
ATCGAAAAAAATTTCGAACT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MFVVVVDSFNQEREESKMNMKIATRLSVFALAGALLAGCATQQGNNAAVGTGTGAALGAGIGALAGGGKGAAIGAGVGAL
VGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGY
TDSTGSAQLNQTLSQNRAQSVVNALAQRGVAGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ

Sequences:

>Translated_232_residues
MFVVVVDSFNQEREESKMNMKIATRLSVFALAGALLAGCATQQGNNAAVGTGTGAALGAGIGALAGGGKGAAIGAGVGAL
VGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGY
TDSTGSAQLNQTLSQNRAQSVVNALAQRGVAGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ
>Mature_232_residues
MFVVVVDSFNQEREESKMNMKIATRLSVFALAGALLAGCATQQGNNAAVGTGTGAALGAGIGALAGGGKGAAIGAGVGAL
VGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVPSSVTFATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGY
TDSTGSAQLNQTLSQNRAQSVVNALAQRGVAGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=217, Percent_Identity=42.8571428571429, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI1787191, Length=122, Percent_Identity=36.0655737704918, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1788957, Length=117, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23524; Mature: 23524

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVVVVDSFNQEREESKMNMKIATRLSVFALAGALLAGCATQQGNNAAVGTGTGAALGAG
CEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCC
IGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVP
HHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEECC
SSVTFATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGYTDSTGSAQLNQTLSQNRAQS
CCEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
VVNALAQRGVAGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ
HHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MFVVVVDSFNQEREESKMNMKIATRLSVFALAGALLAGCATQQGNNAAVGTGTGAALGAG
CEEEEEECCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCC
IGALAGGGKGAAIGAGVGALVGGVTGYNWQAIKNKLAPSAAQTGTQVTEQPDGSLKLNVP
HHHHCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHCCCCCCCCCCCCEEEECC
SSVTFATNQYAITPAFTPLLNDLATTLNQNPQLTGSVIGYTDSTGSAQLNQTLSQNRAQS
CCEEEECCCEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
VVNALAQRGVAGGRLSAQGMGPSNPIADNATEAGRAQNRRVEIYLRAPQQHQ
HHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]