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The map label for this gene is intB [H]

Identifier: 115352472

GI number: 115352472

Start: 2669954

End: 2671168

Strand: Direct

Name: intB [H]

Synonym: Bamb_2421

Alternate gene names: 115352472

Gene position: 2669954-2671168 (Clockwise)

Preceding gene: 115352471

Following gene: 115352478

Centisome position: 75.07

GC content: 63.46

Gene sequence:

>1215_bases
ATGCCTCTCACTGACATACAGGTGCGCAACGCGAAGGCCAGCGCGGCACCATACAAACTGACGGACGGCAACGGGATGTT
CTTGCTCGTCCAACCGAACGGCGCGAAGTACTGGCGCTTGTCCTACCGCTTCCTTGGCAAGCAGAAGACGCTCGCCCTCG
GCGTCTATCCGGCCGTCACGCTTGCGACGGCACGGAAGAAGCGCGACGAGGCCCGCGAGCAGATCGCGGCCGGCATCGAT
CCGGGCGAGGCGAAGAAGGATGCGAAACGGGCCGCCGAAATCGCGGCGGCCAACTCGTTCGAAGCGGTAGCGCGCGAGTG
GTTCGACTCTCAGCGCCCGGGCTGGAGCGACGGCTACGCAGAGAAGGTGCTGAATTCGCTTGAGGTCGACGTGTTCCCCA
AGATCGGTGCTCGCCCGATGGCGGAGATCGACTCGCCGCAGATGCTCAGCATCGTTCGCGAAGTCGAGGCGCGTGGGGTG
CGGGAGACAGCGAAGCGGATTCTCCAGCGCTCACGCGCGGTCTTCCAGTACGGGATCATGACCGGCCGATGCTCCAGGAA
TCCGGCAGCCGACATCGATGCGCAGACGGTCCTGAAGAAGGGTCCCGGCGTGCAGCACATGGCCCGCGTCAAGGCGACGG
AGATTCCGCAGCTCATGCGCGACATTGACGCCTACCAAGGGGACCTAGTTACCCGGCTCGCGCTCCGCCTGATGGCACTG
ACCTTCGTGCGGACAACGGAAATGATCCGTGCAGAGTGGTCGGAGTTTGATGAGGCCGCAGCAGAATGGCGCGTTCCGCC
TGAACGCATGAAGATGCGCGACCCACACATCGTGCCGCTATCGCGGCAGGCACTCGACGTACTCGCCCAGCTCCGCGCGC
TCAACGGCCAGCATCGCTTCGTGTTCTACAGCGTGCAAGGCCGAAGCCACATTTCGAACAACACCATGCTCTATACGCTC
TATCATATGGGCTACAAGTCGCGAATGACGGGGCACGGCTTTCGCGGACCGACAGCTACGGCTCTGCGTGAACTCGGCTT
CGGCCGGGACGTTGTGGAGCGCCAGATGGCACACGCCGAACGCAATCAAGTAACGGCCGCCTACGTCCACGCCGAGTATC
TGCCGGAGCGCAGGCGAATGATGCAGGTGTGGGGCGATCACCTCGACCGTCTCAAGGCAGGGGCGGACGTCATCCCCACT
GTGTCAGTCCGATAG

Upstream 100 bases:

>100_bases
CTCTAGCTCCTATCGTTACCCAAGGTTGCTCAGTGACAGCCAGAGAAAGTGTTGGTATTTTTGTTGGTATCAGAAGATAC
CAACAACACAGATACCAACA

Downstream 100 bases:

>100_bases
CGGTCCCGTGTCGCCCGCGCTCTTACCCGCTAAGAACGGGATTGGGCGCTTTTTCAGTTGCCAAGGCGAGCGTCGCAGAA
CGCTTCGGTCGCGAGCAAAT

Product: phage integrase family protein

Products: NA

Alternate protein names: Int(P4) [H]

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVTLATARKKRDEAREQIAAGID
PGEAKKDAKRAAEIAAANSFEAVAREWFDSQRPGWSDGYAEKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGV
RETAKRILQRSRAVFQYGIMTGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL
TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRFVFYSVQGRSHISNNTMLYTL
YHMGYKSRMTGHGFRGPTATALRELGFGRDVVERQMAHAERNQVTAAYVHAEYLPERRRMMQVWGDHLDRLKAGADVIPT
VSVR

Sequences:

>Translated_404_residues
MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVTLATARKKRDEAREQIAAGID
PGEAKKDAKRAAEIAAANSFEAVAREWFDSQRPGWSDGYAEKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGV
RETAKRILQRSRAVFQYGIMTGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL
TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRFVFYSVQGRSHISNNTMLYTL
YHMGYKSRMTGHGFRGPTATALRELGFGRDVVERQMAHAERNQVTAAYVHAEYLPERRRMMQVWGDHLDRLKAGADVIPT
VSVR
>Mature_403_residues
PLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVTLATARKKRDEAREQIAAGIDP
GEAKKDAKRAAEIAAANSFEAVAREWFDSQRPGWSDGYAEKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGVR
ETAKRILQRSRAVFQYGIMTGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMALT
FVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRFVFYSVQGRSHISNNTMLYTLY
HMGYKSRMTGHGFRGPTATALRELGFGRDVVERQMAHAERNQVTAAYVHAEYLPERRRMMQVWGDHLDRLKAGADVIPTV
SVR

Specific function: Unknown

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=404, Percent_Identity=35.8910891089109, Blast_Score=257, Evalue=1e-69,
Organism=Escherichia coli, GI145693166, Length=400, Percent_Identity=38.75, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1788690, Length=390, Percent_Identity=35.6410256410256, Blast_Score=243, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45539; Mature: 45408

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT
CCCCCCEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEHHHHHCCCCEEEEECHHHHH
LATARKKRDEAREQIAAGIDPGEAKKDAKRAAEIAAANSFEAVAREWFDSQRPGWSDGYA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHH
EKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM
HHHHHHCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCE
TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL
ECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
VFYSVQGRSHISNNTMLYTLYHMGYKSRMTGHGFRGPTATALRELGFGRDVVERQMAHAE
EEEEECCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
RNQVTAAYVHAEYLPERRRMMQVWGDHLDRLKAGADVIPTVSVR
HHCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT
CCCCCEEECCCCCCCCEEEECCCEEEEEEECCCCCEEEEHHHHHCCCCEEEEECHHHHH
LATARKKRDEAREQIAAGIDPGEAKKDAKRAAEIAAANSFEAVAREWFDSQRPGWSDGYA
HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHH
EKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM
HHHHHHCCCEECCCCCCCCHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCE
TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL
ECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
VFYSVQGRSHISNNTMLYTLYHMGYKSRMTGHGFRGPTATALRELGFGRDVVERQMAHAE
EEEEECCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
RNQVTAAYVHAEYLPERRRMMQVWGDHLDRLKAGADVIPTVSVR
HHCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]