| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352471
Identifier: 115352471
GI number: 115352471
Start: 2669122
End: 2669646
Strand: Direct
Name: 115352471
Synonym: Bamb_2420
Alternate gene names: NA
Gene position: 2669122-2669646 (Clockwise)
Preceding gene: 115352470
Following gene: 115352472
Centisome position: 75.05
GC content: 57.33
Gene sequence:
>525_bases ATGGCCGATACCCAAGAGCATCAAGAGTGGCTGCCGCTAGAGGAAGCCGCACGTAAGATGAAGCGAGCACCGAACCCCAT CCGCATAAAGATCAGGGACGGTCGGCTCATTCGCAACGTCCATTTCCGCGTTCCCGAGCAAGGTGATATTGAGATCGACA TCCGGGCCTACGTTGAGTTGCTAGCCCTCGAGAACACCGACCGCAGACTACCGCTGGTCGAGCGCATTGGCAGAGGTGAG GACCGTGAGCGTGCAGCGATGAATCAGCTTGCATCGACGCGATCGCCCACTGTTCCTGCCAAGCAAAGCAAGGAAGTTCA AAAGCTCATTCCTCTTCGTGTATGGGCTGAGATGGTGTTTGGGGAATACGCCCCGGGCATAGCAACGCTTCGCGCATGGT GCAAAAGTGGAAAGATCCGGCCGGCGCCGAGAAAAGTCGGCGCGACCTACTTCTGCAGCCCGACGGCGCGCTATTACGAC TATGAAGCCGAGCGGCTCGATCTGATCTATGGGGATTCGTTCTAG
Upstream 100 bases:
>100_bases TGCGCCTGGCACGCGGACGACGACAAGATGAGCGGTCGTGAATCTGGTCATGTAGGCGTAGGATTATCGCTCGTACGAAC CCTCGCGAGCCTGCATCGAT
Downstream 100 bases:
>100_bases CCAATCCGCATTGCGGCCGCTCGCCCATTAGCCGCTTCCCCCTCCTCGCCTCGATCATCCGGGGGTTGTTTTGGGGGTCT TTTTGCGTGAGATACCGATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 174; Mature: 173
Protein sequence:
>174_residues MADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVELLALENTDRRLPLVERIGRGE DRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVFGEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYD YEAERLDLIYGDSF
Sequences:
>Translated_174_residues MADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVELLALENTDRRLPLVERIGRGE DRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVFGEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYD YEAERLDLIYGDSF >Mature_173_residues ADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVELLALENTDRRLPLVERIGRGED RERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVFGEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYDY EAERLDLIYGDSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20096; Mature: 19965
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVEL CCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCEEEEHHHHHHH LALENTDRRLPLVERIGRGEDRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVF HHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH GEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYDYEAERLDLIYGDSF HHCCCHHHHHHHHHHCCCCCCCCHHHCCEEEECCCCHHCCCCCCEEEEEECCCC >Mature Secondary Structure ADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVEL CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCEEEEHHHHHHH LALENTDRRLPLVERIGRGEDRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVF HHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH GEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYDYEAERLDLIYGDSF HHCCCHHHHHHHHHHCCCCCCCCHHHCCEEEECCCCHHCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA