Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115352471

Identifier: 115352471

GI number: 115352471

Start: 2669122

End: 2669646

Strand: Direct

Name: 115352471

Synonym: Bamb_2420

Alternate gene names: NA

Gene position: 2669122-2669646 (Clockwise)

Preceding gene: 115352470

Following gene: 115352472

Centisome position: 75.05

GC content: 57.33

Gene sequence:

>525_bases
ATGGCCGATACCCAAGAGCATCAAGAGTGGCTGCCGCTAGAGGAAGCCGCACGTAAGATGAAGCGAGCACCGAACCCCAT
CCGCATAAAGATCAGGGACGGTCGGCTCATTCGCAACGTCCATTTCCGCGTTCCCGAGCAAGGTGATATTGAGATCGACA
TCCGGGCCTACGTTGAGTTGCTAGCCCTCGAGAACACCGACCGCAGACTACCGCTGGTCGAGCGCATTGGCAGAGGTGAG
GACCGTGAGCGTGCAGCGATGAATCAGCTTGCATCGACGCGATCGCCCACTGTTCCTGCCAAGCAAAGCAAGGAAGTTCA
AAAGCTCATTCCTCTTCGTGTATGGGCTGAGATGGTGTTTGGGGAATACGCCCCGGGCATAGCAACGCTTCGCGCATGGT
GCAAAAGTGGAAAGATCCGGCCGGCGCCGAGAAAAGTCGGCGCGACCTACTTCTGCAGCCCGACGGCGCGCTATTACGAC
TATGAAGCCGAGCGGCTCGATCTGATCTATGGGGATTCGTTCTAG

Upstream 100 bases:

>100_bases
TGCGCCTGGCACGCGGACGACGACAAGATGAGCGGTCGTGAATCTGGTCATGTAGGCGTAGGATTATCGCTCGTACGAAC
CCTCGCGAGCCTGCATCGAT

Downstream 100 bases:

>100_bases
CCAATCCGCATTGCGGCCGCTCGCCCATTAGCCGCTTCCCCCTCCTCGCCTCGATCATCCGGGGGTTGTTTTGGGGGTCT
TTTTGCGTGAGATACCGATC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVELLALENTDRRLPLVERIGRGE
DRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVFGEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYD
YEAERLDLIYGDSF

Sequences:

>Translated_174_residues
MADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVELLALENTDRRLPLVERIGRGE
DRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVFGEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYD
YEAERLDLIYGDSF
>Mature_173_residues
ADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVELLALENTDRRLPLVERIGRGED
RERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVFGEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYDY
EAERLDLIYGDSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20096; Mature: 19965

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVEL
CCCCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCEEEEHHHHHHH
LALENTDRRLPLVERIGRGEDRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVF
HHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYDYEAERLDLIYGDSF
HHCCCHHHHHHHHHHCCCCCCCCHHHCCEEEECCCCHHCCCCCCEEEEEECCCC
>Mature Secondary Structure 
ADTQEHQEWLPLEEAARKMKRAPNPIRIKIRDGRLIRNVHFRVPEQGDIEIDIRAYVEL
CCCCCHHHCCCHHHHHHHHHCCCCCEEEEEECCEEEEEEEEECCCCCCEEEEHHHHHHH
LALENTDRRLPLVERIGRGEDRERAAMNQLASTRSPTVPAKQSKEVQKLIPLRVWAEMVF
HHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
GEYAPGIATLRAWCKSGKIRPAPRKVGATYFCSPTARYYDYEAERLDLIYGDSF
HHCCCHHHHHHHHHHCCCCCCCCHHHCCEEEECCCCHHCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA