| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352442
Identifier: 115352442
GI number: 115352442
Start: 2637817
End: 2639025
Strand: Direct
Name: 115352442
Synonym: Bamb_2391
Alternate gene names: NA
Gene position: 2637817-2639025 (Clockwise)
Preceding gene: 115352441
Following gene: 115352444
Centisome position: 74.17
GC content: 66.67
Gene sequence:
>1209_bases ATGACAACCGTCGAAGTCGAAGCGGCCGAACGTGTCGAACCGGCACAGGCCTCCCTATGGACCTTGTTCAAGGTCGTCGC CGGCATTTCCGCCGTATCGTGGGGCGGGCTGTCGATGATGGCCCAGCTCGAACGCCACTACGTCGACCGGTTGCAGCGCA TCGAGCCGCACGTGTTCGCCGATTTCATCGCCCTCGCATGGCTCGTGCCGGGCCCGGTCGGCTGCAATGTCGCGGTGCAG GTCGGGCAGACGCTGCACGGCCGCGTCGGCGCGTGGATCGCCGGCATCGCGAGCGTGCTGCCGTTCTTCCTGCTGATGAC GCTGTTCGCGATCTTCTACCGCACGCCGATCGTGCGCTCGCTCGCCGCGCCGATGCTGATCAATCACTTCGGGATGGTGC TCGCCGCGCTGATCGGCGTCACGTGGATCAAGCAGTTGCGTACGCTCGCGCGCACGCGGCTCGAACAGTTGATTGCCGCG CTATCGACAATTCTGCTCGCTTTCGCGCATAGTCCGGCCGCGTTCGTCGGGATTCTTTTCGCCGCGTTTGCAGCCGGCTG GCTGACCGGGCCGCCGCAAGACGACGCGGTCGACTTCACGCTATCGAAGCGCGACCGCAACCTGCTCGTGCTGCTCGCCA TCCTCGTCGCGCTGTTCGCGCTGCCGCTGTCCGGCGACTACCAAATGACGCTGCTGTGGCCGCGGCTCGCCGGCGCCGGG ATGACGCTGTTCGGCGGCGGCTTCTCCGCGCTGCCCGTGCTCAAGACGCTGTTCGTGTCGCCGGCGACCGGCATTTCCGA TCACGACTTCACGCTGGCGTTTGCGCTGTCACCCGTGTCGCCCGGCCCGCTGCTGAACGTCGTGCCGTTTCTCGGCTACC TGACCGACGGCTGGACCGGCGCGCTGCTCGCGACCGCCGCGCTGTTCATTCCGTCGGGGTGTCTCGTCGTGTTCGCGCAG AACCATCTGTTCCGGCTCAAGCGCCACTCGCGCTTCGAGCACGGGATGCACCTGATGCGCGCGGCGACGACGGGTTTTCT GGTCGTCGCCGTCGTGAAGATCCTGCATCGCGAACCGGCCGATCCCGTCTATTGGCTCACGGGCGCCTTTGCGATGCTGT GCTTCGCGCGCTTCAAGCTGCCCGTGTATGCCGTCTACGGTGCGGTCGCGATCGCGTGCGGCGCATGGCTGTGGGCCGTC GCGCATTGA
Upstream 100 bases:
>100_bases GTGTCACGATGCGCGGCGGACAATCGGGAGGGCCACCGTGTCGGCGGGCCGCCGGCACGATTTCAAGCGCGAGACCAGGC CCAGCGCCAACAGCATAGTC
Downstream 100 bases:
>100_bases CGGCCGGCGGCAGTCACCGCCACCGCTCGCCCCTTCCCGCTCAGCCTGCCTGCACCGCGACGCGGCGTGCGACCCAGCGC GCCCGCAGCGCGTCGTACGC
Product: chromate transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MTTVEVEAAERVEPAQASLWTLFKVVAGISAVSWGGLSMMAQLERHYVDRLQRIEPHVFADFIALAWLVPGPVGCNVAVQ VGQTLHGRVGAWIAGIASVLPFFLLMTLFAIFYRTPIVRSLAAPMLINHFGMVLAALIGVTWIKQLRTLARTRLEQLIAA LSTILLAFAHSPAAFVGILFAAFAAGWLTGPPQDDAVDFTLSKRDRNLLVLLAILVALFALPLSGDYQMTLLWPRLAGAG MTLFGGGFSALPVLKTLFVSPATGISDHDFTLAFALSPVSPGPLLNVVPFLGYLTDGWTGALLATAALFIPSGCLVVFAQ NHLFRLKRHSRFEHGMHLMRAATTGFLVVAVVKILHREPADPVYWLTGAFAMLCFARFKLPVYAVYGAVAIACGAWLWAV AH
Sequences:
>Translated_402_residues MTTVEVEAAERVEPAQASLWTLFKVVAGISAVSWGGLSMMAQLERHYVDRLQRIEPHVFADFIALAWLVPGPVGCNVAVQ VGQTLHGRVGAWIAGIASVLPFFLLMTLFAIFYRTPIVRSLAAPMLINHFGMVLAALIGVTWIKQLRTLARTRLEQLIAA LSTILLAFAHSPAAFVGILFAAFAAGWLTGPPQDDAVDFTLSKRDRNLLVLLAILVALFALPLSGDYQMTLLWPRLAGAG MTLFGGGFSALPVLKTLFVSPATGISDHDFTLAFALSPVSPGPLLNVVPFLGYLTDGWTGALLATAALFIPSGCLVVFAQ NHLFRLKRHSRFEHGMHLMRAATTGFLVVAVVKILHREPADPVYWLTGAFAMLCFARFKLPVYAVYGAVAIACGAWLWAV AH >Mature_401_residues TTVEVEAAERVEPAQASLWTLFKVVAGISAVSWGGLSMMAQLERHYVDRLQRIEPHVFADFIALAWLVPGPVGCNVAVQV GQTLHGRVGAWIAGIASVLPFFLLMTLFAIFYRTPIVRSLAAPMLINHFGMVLAALIGVTWIKQLRTLARTRLEQLIAAL STILLAFAHSPAAFVGILFAAFAAGWLTGPPQDDAVDFTLSKRDRNLLVLLAILVALFALPLSGDYQMTLLWPRLAGAGM TLFGGGFSALPVLKTLFVSPATGISDHDFTLAFALSPVSPGPLLNVVPFLGYLTDGWTGALLATAALFIPSGCLVVFAQN HLFRLKRHSRFEHGMHLMRAATTGFLVVAVVKILHREPADPVYWLTGAFAMLCFARFKLPVYAVYGAVAIACGAWLWAVA H
Specific function: Unknown
COG id: COG2059
COG function: function code P; Chromate transport protein ChrA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003370 - InterPro: IPR014047 [H]
Pfam domain/function: PF02417 Chromate_transp [H]
EC number: NA
Molecular weight: Translated: 43474; Mature: 43343
Theoretical pI: Translated: 9.44; Mature: 9.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTVEVEAAERVEPAQASLWTLFKVVAGISAVSWGGLSMMAQLERHYVDRLQRIEPHVFA CCEEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHH DFIALAWLVPGPVGCNVAVQVGQTLHGRVGAWIAGIASVLPFFLLMTLFAIFYRTPIVRS HHHHHHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAPMLINHFGMVLAALIGVTWIKQLRTLARTRLEQLIAALSTILLAFAHSPAAFVGILF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AAFAAGWLTGPPQDDAVDFTLSKRDRNLLVLLAILVALFALPLSGDYQMTLLWPRLAGAG HHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCC MTLFGGGFSALPVLKTLFVSPATGISDHDFTLAFALSPVSPGPLLNVVPFLGYLTDGWTG CEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHH ALLATAALFIPSGCLVVFAQNHLFRLKRHSRFEHGMHLMRAATTGFLVVAVVKILHREPA HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DPVYWLTGAFAMLCFARFKLPVYAVYGAVAIACGAWLWAVAH CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TTVEVEAAERVEPAQASLWTLFKVVAGISAVSWGGLSMMAQLERHYVDRLQRIEPHVFA CEEEECHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHH DFIALAWLVPGPVGCNVAVQVGQTLHGRVGAWIAGIASVLPFFLLMTLFAIFYRTPIVRS HHHHHHHHCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAAPMLINHFGMVLAALIGVTWIKQLRTLARTRLEQLIAALSTILLAFAHSPAAFVGILF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH AAFAAGWLTGPPQDDAVDFTLSKRDRNLLVLLAILVALFALPLSGDYQMTLLWPRLAGAG HHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHCCCC MTLFGGGFSALPVLKTLFVSPATGISDHDFTLAFALSPVSPGPLLNVVPFLGYLTDGWTG CEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHH ALLATAALFIPSGCLVVFAQNHLFRLKRHSRFEHGMHLMRAATTGFLVVAVVKILHREPA HHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DPVYWLTGAFAMLCFARFKLPVYAVYGAVAIACGAWLWAVAH CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]