| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115352436
Identifier: 115352436
GI number: 115352436
Start: 2630640
End: 2631332
Strand: Direct
Name: 115352436
Synonym: Bamb_2385
Alternate gene names: NA
Gene position: 2630640-2631332 (Clockwise)
Preceding gene: 115352431
Following gene: 115352437
Centisome position: 73.97
GC content: 74.03
Gene sequence:
>693_bases ATGCCAGCCCGCTCCCTGACCCTCGACCATCTCGTGATCGCCGCGCGCACGCTCGACGACGGCGTACGCCACGTCACTAA CACGCTCGGCATCGAACCGGCCGGCGGCGGCCGCCACCCGCTGATGCGCACCCATAACGCGCTGTTCGGCGCGTGGGGCG GGCTATACCTCGAAGTGATCGCGATCGATCCCGACGCACCGACCGCGGGCGACGACGCCACGCCGCCGCGCGCGCGGCTG TTCGGCCTCGACGATCCGGCGATGCACGCCCGGCTCGCGCACGGCCCGTTCCTCGCGCACTGGGTCGCGCGCGTCGACCG CCCGCGCCAGCTCGCGCTATGGCAGAGCCAGTACCCGGCGCGCATCGCGCCGGTCGTCACGATGCGCCGCGGCGACCTGA GCTGGGGCCTCACGGTGCCCGACGACGGCGCGTTCCCCGCGTGGCAAGGCGCCGGCGACGGCCTCGCGCCGTCGCTGATC CAGTGGGACAGCCCGCGTCATCCGGCCGAATCGCTGCCGGACAACGGCGTCGCGCTGAAGTCGCTCAAGGGCGTCCACCC GCGTGCGGACACGATCCGCGAGCAGCTCGACTGGCTCGGCGCCGGCCATCTGCTCGACGTCGAAACCGGCGACGGCCCGC CCGCGCTCGTCGCGGAGTTCGACACGCCGCAAGGCGCCCGCACGCTGCGCTGA
Upstream 100 bases:
>100_bases CACGCGGGTCGGCACCGCCCGGCTTGCAGCGCGGCCCGGGCATCGGCCGGTCGCGCTACCGTCCGCCCACCATGACACTT TCGCTTCCCGACCGACGTTC
Downstream 100 bases:
>100_bases CGGCCCGGCCACCCCTTCGATTACACGAACCTAGCCAAACCCAGCAATCCGGAGACACCCAGTACATGAATTCGCGCGAA ACCCGGGGCATGCTGCTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 230; Mature: 229
Protein sequence:
>230_residues MPARSLTLDHLVIAARTLDDGVRHVTNTLGIEPAGGGRHPLMRTHNALFGAWGGLYLEVIAIDPDAPTAGDDATPPRARL FGLDDPAMHARLAHGPFLAHWVARVDRPRQLALWQSQYPARIAPVVTMRRGDLSWGLTVPDDGAFPAWQGAGDGLAPSLI QWDSPRHPAESLPDNGVALKSLKGVHPRADTIREQLDWLGAGHLLDVETGDGPPALVAEFDTPQGARTLR
Sequences:
>Translated_230_residues MPARSLTLDHLVIAARTLDDGVRHVTNTLGIEPAGGGRHPLMRTHNALFGAWGGLYLEVIAIDPDAPTAGDDATPPRARL FGLDDPAMHARLAHGPFLAHWVARVDRPRQLALWQSQYPARIAPVVTMRRGDLSWGLTVPDDGAFPAWQGAGDGLAPSLI QWDSPRHPAESLPDNGVALKSLKGVHPRADTIREQLDWLGAGHLLDVETGDGPPALVAEFDTPQGARTLR >Mature_229_residues PARSLTLDHLVIAARTLDDGVRHVTNTLGIEPAGGGRHPLMRTHNALFGAWGGLYLEVIAIDPDAPTAGDDATPPRARLF GLDDPAMHARLAHGPFLAHWVARVDRPRQLALWQSQYPARIAPVVTMRRGDLSWGLTVPDDGAFPAWQGAGDGLAPSLIQ WDSPRHPAESLPDNGVALKSLKGVHPRADTIREQLDWLGAGHLLDVETGDGPPALVAEFDTPQGARTLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24746; Mature: 24615
Theoretical pI: Translated: 6.34; Mature: 6.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPARSLTLDHLVIAARTLDDGVRHVTNTLGIEPAGGGRHPLMRTHNALFGAWGGLYLEVI CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE AIDPDAPTAGDDATPPRARLFGLDDPAMHARLAHGPFLAHWVARVDRPRQLALWQSQYPA EECCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCCHHHHHHHHHCCCCHHEEEHHCCCCC RIAPVVTMRRGDLSWGLTVPDDGAFPAWQGAGDGLAPSLIQWDSPRHPAESLPDNGVALK EECEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCEEHH SLKGVHPRADTIREQLDWLGAGHLLDVETGDGPPALVAEFDTPQGARTLR HHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure PARSLTLDHLVIAARTLDDGVRHVTNTLGIEPAGGGRHPLMRTHNALFGAWGGLYLEVI CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEE AIDPDAPTAGDDATPPRARLFGLDDPAMHARLAHGPFLAHWVARVDRPRQLALWQSQYPA EECCCCCCCCCCCCCCCCEEECCCCHHHHHHHCCCHHHHHHHHHCCCCHHEEEHHCCCCC RIAPVVTMRRGDLSWGLTVPDDGAFPAWQGAGDGLAPSLIQWDSPRHPAESLPDNGVALK EECEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHCCCCCEEHH SLKGVHPRADTIREQLDWLGAGHLLDVETGDGPPALVAEFDTPQGARTLR HHCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA