| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is pgl [H]
Identifier: 115352272
GI number: 115352272
Start: 2448379
End: 2449428
Strand: Direct
Name: pgl [H]
Synonym: Bamb_2221
Alternate gene names: 115352272
Gene position: 2448379-2449428 (Clockwise)
Preceding gene: 115352271
Following gene: 115352274
Centisome position: 68.84
GC content: 72.95
Gene sequence:
>1050_bases ATGCCGAACACTGATCGCCTGACCGTCGTCGTCTCGAATGCCGTCGACGGCGACCTCGCCACGTTCTCGCTCACGTCCGA CGGCGCGCTCGCGCCGCTCGCCCGCTACCCGGCCGGCGACGCCGCGATGCCCGTCGCCGTGCAGCCCGATCGCGCGCGGC TGTACGTCGCGACGCGCGGCGAGCAGCCGACGATCGTCGCGTTCCGCGTCGCGACCGGCACCGGCGCGTTCGCCCGCATC GGCGCGACCGCGATCGACGCGAGCCTTGCGTACCTGTCGCTCGACCGCAGCGGCCGCTGGCTGCTCGGCGCGTCGTACGG CGGCAATTCGCTGAGCCTCTACGACGCCGCACACGTACGTGACGGCGACGGCGCGCCGCTGCAGGTCGTACACGGCATCG CGAACGCGCATGCCGTCGTCGTGTCGCCGGACAACCGCTTCGCGTATGTGAGTTCGCTCGGCTCGGACCGGATCTTCACG TTCGCGCTGGTCGAGGATGCCGGCGGCCTGCGTGCGCTCGAACACGGCGAAACGCGCGTGCCGGGCGGCTTCGGGCCGCG TCACCTGCGCTTCGCGCGCGACGGCCGCGCGCTCGTCGCGGTCAGCGAATTCCAGGCCACGCTCGCGACCTTCGCACGCG ACACCGACAGCGGCCGCCTCGGCGACGCGCAGGTCAGCGGGCGGCACGCGGCCGTCGCCGACCTCCCGCAAGGCCACGCG CGCCCGCCCGCGCCGACCGTGCCCGCCGTGTGGGCCGCCGATCTGCACCTCACGCCCGACGAGCGCTTCGCGTATGTCAG CGAACGCACGTCGAGCCAGTTGCTCTGCTATCGGCGCGCTGCGGACGGCAGCTTCGAACCGGTGCACGCGACGCTCACCG AAACGCAGCCACGCGGCTTCGCGATCGACCCGTCGGGACGCTGGCTCGTCGCGTGCGGCGAACAGTCGGAATACGCGTCG GTCTACGCGATCGCGCCGGACGACGGCACGCTGGCGTTGCATGCGCGCGTGCCGGGTGGGCGCGGCGCGAACTGGGTTGC GATCGTCTGA
Upstream 100 bases:
>100_bases GCGGCGGTCGCCGCGCTGTTCGCGCGCACGCACCGGCGCAGCGATCCGCCGCGCGGCCTGCCGGCCGACGAGTCCTTCAC GAACACCGCGATGCTCCGCC
Downstream 100 bases:
>100_bases TTCTGATTGTCGAATGACCGATGGATCGACGCCGTGCGCATGGCCGGCATCGGCCGACAGCGGCCCGCGCGCCGTCAGCG CCGCTCGCTCGGCGCGACGC
Product: 3-carboxymuconate cyclase-like protein
Products: NA
Alternate protein names: 6-P-gluconolactonase [H]
Number of amino acids: Translated: 349; Mature: 348
Protein sequence:
>349_residues MPNTDRLTVVVSNAVDGDLATFSLTSDGALAPLARYPAGDAAMPVAVQPDRARLYVATRGEQPTIVAFRVATGTGAFARI GATAIDASLAYLSLDRSGRWLLGASYGGNSLSLYDAAHVRDGDGAPLQVVHGIANAHAVVVSPDNRFAYVSSLGSDRIFT FALVEDAGGLRALEHGETRVPGGFGPRHLRFARDGRALVAVSEFQATLATFARDTDSGRLGDAQVSGRHAAVADLPQGHA RPPAPTVPAVWAADLHLTPDERFAYVSERTSSQLLCYRRAADGSFEPVHATLTETQPRGFAIDPSGRWLVACGEQSEYAS VYAIAPDDGTLALHARVPGGRGANWVAIV
Sequences:
>Translated_349_residues MPNTDRLTVVVSNAVDGDLATFSLTSDGALAPLARYPAGDAAMPVAVQPDRARLYVATRGEQPTIVAFRVATGTGAFARI GATAIDASLAYLSLDRSGRWLLGASYGGNSLSLYDAAHVRDGDGAPLQVVHGIANAHAVVVSPDNRFAYVSSLGSDRIFT FALVEDAGGLRALEHGETRVPGGFGPRHLRFARDGRALVAVSEFQATLATFARDTDSGRLGDAQVSGRHAAVADLPQGHA RPPAPTVPAVWAADLHLTPDERFAYVSERTSSQLLCYRRAADGSFEPVHATLTETQPRGFAIDPSGRWLVACGEQSEYAS VYAIAPDDGTLALHARVPGGRGANWVAIV >Mature_348_residues PNTDRLTVVVSNAVDGDLATFSLTSDGALAPLARYPAGDAAMPVAVQPDRARLYVATRGEQPTIVAFRVATGTGAFARIG ATAIDASLAYLSLDRSGRWLLGASYGGNSLSLYDAAHVRDGDGAPLQVVHGIANAHAVVVSPDNRFAYVSSLGSDRIFTF ALVEDAGGLRALEHGETRVPGGFGPRHLRFARDGRALVAVSEFQATLATFARDTDSGRLGDAQVSGRHAAVADLPQGHAR PPAPTVPAVWAADLHLTPDERFAYVSERTSSQLLCYRRAADGSFEPVHATLTETQPRGFAIDPSGRWLVACGEQSEYASV YAIAPDDGTLALHARVPGGRGANWVAIV
Specific function: Catalyzes the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate [H]
COG id: COG2706
COG function: function code G; 3-carboxymuconate cyclase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the cycloisomerase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1786983, Length=352, Percent_Identity=30.6818181818182, Blast_Score=160, Evalue=1e-40,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022528 - InterPro: IPR019405 - InterPro: IPR011045 - InterPro: IPR015943 [H]
Pfam domain/function: PF10282 DUF2394 [H]
EC number: =3.1.1.31 [H]
Molecular weight: Translated: 36683; Mature: 36552
Theoretical pI: Translated: 6.35; Mature: 6.35
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNTDRLTVVVSNAVDGDLATFSLTSDGALAPLARYPAGDAAMPVAVQPDRARLYVATRG CCCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEEECCCCEEEEEEECC EQPTIVAFRVATGTGAFARIGATAIDASLAYLSLDRSGRWLLGASYGGNSLSLYDAAHVR CCCEEEEEEEECCCCCHHHHCCHHHCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEE DGDGAPLQVVHGIANAHAVVVSPDNRFAYVSSLGSDRIFTFALVEDAGGLRALEHGETRV CCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEECCCCCCC PGGFGPRHLRFARDGRALVAVSEFQATLATFARDTDSGRLGDAQVSGRHAAVADLPQGHA CCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCC RPPAPTVPAVWAADLHLTPDERFAYVSERTSSQLLCYRRAADGSFEPVHATLTETQPRGF CCCCCCCCEEEEEEEEECCHHHEEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCCE AIDPSGRWLVACGEQSEYASVYAIAPDDGTLALHARVPGGRGANWVAIV EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEC >Mature Secondary Structure PNTDRLTVVVSNAVDGDLATFSLTSDGALAPLARYPAGDAAMPVAVQPDRARLYVATRG CCCCEEEEEEECCCCCCEEEEEECCCCCCCHHHHCCCCCCCCEEEECCCCEEEEEEECC EQPTIVAFRVATGTGAFARIGATAIDASLAYLSLDRSGRWLLGASYGGNSLSLYDAAHVR CCCEEEEEEEECCCCCHHHHCCHHHCCEEEEEEECCCCCEEEEECCCCCEEEEEEEEEEE DGDGAPLQVVHGIANAHAVVVSPDNRFAYVSSLGSDRIFTFALVEDAGGLRALEHGETRV CCCCCCCCEEEECCCCEEEEECCCCCEEEEECCCCCCEEEEEEEECCCCCEEECCCCCCC PGGFGPRHLRFARDGRALVAVSEFQATLATFARDTDSGRLGDAQVSGRHAAVADLPQGHA CCCCCCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCCCCCCCCEECCCEEEEECCCCCCC RPPAPTVPAVWAADLHLTPDERFAYVSERTSSQLLCYRRAADGSFEPVHATLTETQPRGF CCCCCCCCEEEEEEEEECCHHHEEEEECCCCCEEEEEEECCCCCCCCEEEEEECCCCCCE AIDPSGRWLVACGEQSEYASVYAIAPDDGTLALHARVPGGRGANWVAIV EECCCCCEEEEECCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA