| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is dctS [H]
Identifier: 115352226
GI number: 115352226
Start: 2390336
End: 2392852
Strand: Direct
Name: dctS [H]
Synonym: Bamb_2175
Alternate gene names: 115352226
Gene position: 2390336-2392852 (Clockwise)
Preceding gene: 115352222
Following gene: 115352227
Centisome position: 67.21
GC content: 66.07
Gene sequence:
>2517_bases ATGTTGACCGATCGGCTTTTCGCACGCTCGGCGCGACCGTCGGGCCCGCCGGCGGAGTCGCAGCCGTCCCGTTGGCACCA CGGACCGTGGTGGTCCAATTCCTATTTGCTGACGCCGCTGCTGTCGATCCTCGTGTTCCTCGTGGTGATGAGCCTGATTC TATGGAGCCTCAATCGCCGCGAACAGCAGCAGCAGGAAGACACGCTGTTCCGTAACGTCGCGTGGGCGCAGCAGCAGATC CGCCTGTCGATGACGGGTGCGCAGGAACAGCTGCAGGCGCTGTCGCGCGATCTCGCGTCGGGCCGCCTCGACCAGAACGC GTTCCAGATGGCCGTGGCGGACGTGATGCAGACGCATCCGGAAATCCTCTATCTGAACTGGTACACCGCGCCCGGCGTGC AGCGCTGGCCGGCCGTGCACCCGCCGCTGCTCGGCCAGCGGCTCGCGAAGCCCGGCGACGCCCAGATGCAGGACGCCGTG CGCGGCGCGTACGACGAAGCGCGCAGCACGCGCCGCCAGGCCTATTCGCCGCTGATCTACGACGACTTCGGCAACGGCTT CATCACGCTGCAGACGCCCGTGATGCGCGGCGACCGCGAATATCTCGGCTCGATCGCCGCGGTGTTCTCGGTCGAAGGGA TCCTGAAGCACGACATCCCGCAGGAGTTGTCGTCGAAGTACAAGATCTCGATCACCGACTCGAACAACCGCGAGCTGTCG TCCACGTCGACGCGCCCGCGCCTGCCGCGCGACTCCCATTACGACCTGCCGCTCGATCCGCCCGGCCAGGGGCTGACCGT GCGCGTGTACGCGTTCCCGCAGCTCACGAACCTGACCAACAACACGCTCGTGTGGCTCGTCGCCGGGCTGTCGTGCTTCG TGCTGTGGAGCCTCTGGAGCCTGTGGAAGCACACGCGCCAGCGCTTCGAGGCGCAGCAGGCGCTGTACGCGGAGGCATTC TTCCGCCGCGCGATGGAAAATTCGGTGCTGATCGGCATGCGCGTGCTCGACATGCACGGCCGCATCACACACGTGAACCC CGCGTTCTGCCGGATGACGGGCTGGGATGAAACCGACCTGGTCGGCAAGGTCGCGCCGTTCCCGTACTGGCCGCGCGACG CGTATCCGGAAATGCAGCGCCAGCTCGACATGACGCTGCGCGGCAAGGCGCCGAGCTCGGGCTTCGAGCTGCGCGTGCGG CGCAAGAACGGCACGCTGTTCCATGCGCGCCTCTACGTGTCGCCGCTGATCGACAGCTCGGGCCGCCAGACCGGCTGGAT GTCGTCGATGACCGACATCACCGAGCCAAAGCGCGCCCGCGAGGAACTCGCGGCCGCGCACGAGCGCTTCACGACGGTGC TCGAAAGCCTCGACGCCGCGGTGTCGGTGCTCGCCGCCGACGAAGCCGAGCTGCTGTTCGCGAACCGCTACTACCGCCAC CTGTTCGGGATTCGCCCCGACGGCCATCTCGAGCTGTCGGGCGGCGGCTTCGACCGCGCGCAGGCGTCGTCCGACTCGAT CGACATGGTCGACACGTTCGCGGGCCTGCCGGCCGCCGCGCTGACGAGCAGCACGGCCGACGCGCAGGAGGTATACGTCG AGAGCATCCAGAAATGGTTCGAGGTGCGCCGCCAGTACATCCAGTGGGTGGACGGCCACCTCGCGCAGATGCAGATCGCG ACCGACATCACGACCCGCAAGAAGGCGCAGGAACTCGCGCACCAGCAGGAAGAGAAGCTGCAGTTCACGAGCCGATTGAT GACGATGGGTGAAATGGCGTCGTCGATTGCTCACGAATTGAATCAGCCGCTCGCCGCGATCAACAACTACTGCTCGGGCA CGCTCGCGCTCGTGAAGAGCGGCCGCGGCACGCCCGAGACGCTGCAGCCCGCGCTGGAAAAGACCGCGCAGCAGGCGCTG CGCGCCGGGATGATCGTCAAGCGGATCCGCGAATTCGTGAAGCGCAGCGAGCCGAAGCGCCAGCCGGCGCGGGTCGCGGA CATCGTCGCCGACGCGGTCGGGCTCGCCGAAATCGAGGCCAGGAAGCGCAGGATCCGGATCGTCACGGAAATCCTCGCAA GAATGCCTATTATTTATGTCGACCCCGTGTTGATCGAGCAGGTACTGATGAACCTGATGAAGAACGCGGCCGAGGCGATG GCCGACGTGAAGCCGGCGACGGTGGACGGCGTGATCCGCGTCGTCGCCGACATCGACGCCGGTTTCGTCGACATCCGCGT GATCGACCAGGGTCCGGGCGTCGACGAGGCAACCGCCGAACGCCTGTTCGAACCGTTTTACAGCACCAAGTCCGACGGCA TGGGCATGGGGCTGAACATCTGCCGTTCGATCATCGAATCGCATCGGGGGCGTCTGTGGGTGGTCAACAATGTCGAACCG GATGGCCGCATTTCCGGCGCGACATTCCACTGCAGCCTGCCCATTGGGGAACCCGCTGATCTCGGCCAAGGGGGGCGCGA GGCATCGGCATCACATACCGTTACGGGAGAACTATGA
Upstream 100 bases:
>100_bases CGGCTGGGGCTCCGCGGCGCGCGCCGCGGGCACAAATCCGTTTCCGTTCAACATATCCGGTATCGGTTTTCCATGTATTG CGCTGCGCTACAATCCTGCC
Downstream 100 bases:
>100_bases ATAGCCCTGTCACCACCACTCAGGAAACCGTCTTCGTCGTCGACGACGACGAGGCCGTACGGGACTCGCTGCGCTGGCTG CTGGAGGCGAACGGCTATCG
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 838; Mature: 838
Protein sequence:
>838_residues MLTDRLFARSARPSGPPAESQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLFRNVAWAQQQI RLSMTGAQEQLQALSRDLASGRLDQNAFQMAVADVMQTHPEILYLNWYTAPGVQRWPAVHPPLLGQRLAKPGDAQMQDAV RGAYDEARSTRRQAYSPLIYDDFGNGFITLQTPVMRGDREYLGSIAAVFSVEGILKHDIPQELSSKYKISITDSNNRELS STSTRPRLPRDSHYDLPLDPPGQGLTVRVYAFPQLTNLTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAF FRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDETDLVGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVR RKNGTLFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRH LFGIRPDGHLELSGGGFDRAQASSDSIDMVDTFAGLPAAALTSSTADAQEVYVESIQKWFEVRRQYIQWVDGHLAQMQIA TDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELNQPLAAINNYCSGTLALVKSGRGTPETLQPALEKTAQQAL RAGMIVKRIREFVKRSEPKRQPARVADIVADAVGLAEIEARKRRIRIVTEILARMPIIYVDPVLIEQVLMNLMKNAAEAM ADVKPATVDGVIRVVADIDAGFVDIRVIDQGPGVDEATAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNVEP DGRISGATFHCSLPIGEPADLGQGGREASASHTVTGEL
Sequences:
>Translated_838_residues MLTDRLFARSARPSGPPAESQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLFRNVAWAQQQI RLSMTGAQEQLQALSRDLASGRLDQNAFQMAVADVMQTHPEILYLNWYTAPGVQRWPAVHPPLLGQRLAKPGDAQMQDAV RGAYDEARSTRRQAYSPLIYDDFGNGFITLQTPVMRGDREYLGSIAAVFSVEGILKHDIPQELSSKYKISITDSNNRELS STSTRPRLPRDSHYDLPLDPPGQGLTVRVYAFPQLTNLTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAF FRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDETDLVGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVR RKNGTLFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRH LFGIRPDGHLELSGGGFDRAQASSDSIDMVDTFAGLPAAALTSSTADAQEVYVESIQKWFEVRRQYIQWVDGHLAQMQIA TDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELNQPLAAINNYCSGTLALVKSGRGTPETLQPALEKTAQQAL RAGMIVKRIREFVKRSEPKRQPARVADIVADAVGLAEIEARKRRIRIVTEILARMPIIYVDPVLIEQVLMNLMKNAAEAM ADVKPATVDGVIRVVADIDAGFVDIRVIDQGPGVDEATAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNVEP DGRISGATFHCSLPIGEPADLGQGGREASASHTVTGEL >Mature_838_residues MLTDRLFARSARPSGPPAESQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLFRNVAWAQQQI RLSMTGAQEQLQALSRDLASGRLDQNAFQMAVADVMQTHPEILYLNWYTAPGVQRWPAVHPPLLGQRLAKPGDAQMQDAV RGAYDEARSTRRQAYSPLIYDDFGNGFITLQTPVMRGDREYLGSIAAVFSVEGILKHDIPQELSSKYKISITDSNNRELS STSTRPRLPRDSHYDLPLDPPGQGLTVRVYAFPQLTNLTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAF FRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDETDLVGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVR RKNGTLFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRH LFGIRPDGHLELSGGGFDRAQASSDSIDMVDTFAGLPAAALTSSTADAQEVYVESIQKWFEVRRQYIQWVDGHLAQMQIA TDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHELNQPLAAINNYCSGTLALVKSGRGTPETLQPALEKTAQQAL RAGMIVKRIREFVKRSEPKRQPARVADIVADAVGLAEIEARKRRIRIVTEILARMPIIYVDPVLIEQVLMNLMKNAAEAM ADVKPATVDGVIRVVADIDAGFVDIRVIDQGPGVDEATAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNVEP DGRISGATFHCSLPIGEPADLGQGGREASASHTVTGEL
Specific function: Member of the two-component regulatory system dctS/dctR involved in the transport of C4-dicarboxylates. DctS functions as a membrane-associated protein kinase that phosphorylates dctR in response to environmental signals [H]
COG id: COG2202
COG function: function code T; FOG: PAS/PAC domain
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1790436, Length=239, Percent_Identity=27.6150627615063, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1788549, Length=267, Percent_Identity=26.9662921348315, Blast_Score=96, Evalue=1e-20, Organism=Escherichia coli, GI1786912, Length=258, Percent_Identity=24.8062015503876, Blast_Score=66, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 93855; Mature: 93855
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTDRLFARSARPSGPPAESQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRR CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EQQQQEDTLFRNVAWAQQQIRLSMTGAQEQLQALSRDLASGRLDQNAFQMAVADVMQTHP HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC EILYLNWYTAPGVQRWPAVHPPLLGQRLAKPGDAQMQDAVRGAYDEARSTRRQAYSPLIY CEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE DDFGNGFITLQTPVMRGDREYLGSIAAVFSVEGILKHDIPQELSSKYKISITDSNNRELS ECCCCCEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCC STSTRPRLPRDSHYDLPLDPPGQGLTVRVYAFPQLTNLTNNTLVWLVAGLSCFVLWSLWS CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHH LWKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDETDL HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCHHHEEECCCCCHHH VGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRRKNGTLFHARLYVSPLIDSS CCCCCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCEEEEEECCCCEEEEEEEEEHHHCCC GRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRH CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LFGIRPDGHLELSGGGFDRAQASSDSIDMVDTFAGLPAAALTSSTADAQEVYVESIQKWF HHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH EVRRQYIQWVDGHLAQMQIATDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHEL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQPLAAINNYCSGTLALVKSGRGTPETLQPALEKTAQQALRAGMIVKRIREFVKRSEPKR CCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QPARVADIVADAVGLAEIEARKRRIRIVTEILARMPIIYVDPVLIEQVLMNLMKNAAEAM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHH ADVKPATVDGVIRVVADIDAGFVDIRVIDQGPGVDEATAERLFEPFYSTKSDGMGMGLNI HCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHH CRSIIESHRGRLWVVNNVEPDGRISGATFHCSLPIGEPADLGQGGREASASHTVTGEL HHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLTDRLFARSARPSGPPAESQPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRR CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH EQQQQEDTLFRNVAWAQQQIRLSMTGAQEQLQALSRDLASGRLDQNAFQMAVADVMQTHP HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC EILYLNWYTAPGVQRWPAVHPPLLGQRLAKPGDAQMQDAVRGAYDEARSTRRQAYSPLIY CEEEEEEECCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE DDFGNGFITLQTPVMRGDREYLGSIAAVFSVEGILKHDIPQELSSKYKISITDSNNRELS ECCCCCEEEEECCHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHCCCEEEEEECCCCCCCC STSTRPRLPRDSHYDLPLDPPGQGLTVRVYAFPQLTNLTNNTLVWLVAGLSCFVLWSLWS CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHCCCCCHHHHHHHHHHHHHHHHHHH LWKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDETDL HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEECCHHHEEECCCCCHHH VGKVAPFPYWPRDAYPEMQRQLDMTLRGKAPSSGFELRVRRKNGTLFHARLYVSPLIDSS CCCCCCCCCCCCCCCHHHHHHHCCCEECCCCCCCCEEEEEECCCCEEEEEEEEEHHHCCC GRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRH CCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LFGIRPDGHLELSGGGFDRAQASSDSIDMVDTFAGLPAAALTSSTADAQEVYVESIQKWF HHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH EVRRQYIQWVDGHLAQMQIATDITTRKKAQELAHQQEEKLQFTSRLMTMGEMASSIAHEL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NQPLAAINNYCSGTLALVKSGRGTPETLQPALEKTAQQALRAGMIVKRIREFVKRSEPKR CCHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC QPARVADIVADAVGLAEIEARKRRIRIVTEILARMPIIYVDPVLIEQVLMNLMKNAAEAM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHH ADVKPATVDGVIRVVADIDAGFVDIRVIDQGPGVDEATAERLFEPFYSTKSDGMGMGLNI HCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHH CRSIIESHRGRLWVVNNVEPDGRISGATFHCSLPIGEPADLGQGGREASASHTVTGEL HHHHHHHCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8455557 [H]