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The map label for this gene is trbI [H]

Identifier: 115352064

GI number: 115352064

Start: 2209003

End: 2210286

Strand: Direct

Name: trbI [H]

Synonym: Bamb_2013

Alternate gene names: 115352064

Gene position: 2209003-2210286 (Clockwise)

Preceding gene: 115352063

Following gene: 115352065

Centisome position: 62.11

GC content: 68.61

Gene sequence:

>1284_bases
ATGAGCCAGGACGACACTCCCGACCTCGCCGCGCCGCAGGCGGCGGGCAAGATCGCGCCCGAGGCGGTGGCGCTGCGCGC
CCTGCCGCGCCCGGTCACGCGCCTGAATCGGCGCACGCTGGCCATCCTCACCGGCGGCCTGTCGGTCGCCGTACTCGGCG
CGCTGATGTGGTCGCTGCAACCACAGCGGCGCGGGGCCAACGAGCAGGCCGAGCTTTACAACGTGGATCGCGTCTCCAAG
TCCGAAGGATTGGACGCGCTGCCGGCGGATTACTCCAAGCTGCCGTCGGCCTTGCCACCCACGGTACCCGAGCTGGGGCC
GCCGCTGCCGGGCGATCTTGGCCCGGCCATCGTCAAGTCGCAGCAGCCGGTGACGGCCGCCTATGCGGCCCCTGGCAACG
ACCCGAACGATGCGCTGCGCAAGGAAGCCGAAGCGGCCGCGGGTTCATCGGTGTTCTTTCGCTCTGGCACGCAGAAGGCC
GCGCCGGTGGCGCAGTCGCAGGCTACCGCCGCGCCGGGCTTCGCTGCCAATGCGGCGTTCGACCCGATGGCGGCCGGGCC
AGCCTCCACAGCGGCGCAGCCCGCCGACCTGACGGCGGTACAGAACCGGCAAGACCAGAAAGAGGCATTCCAGAAAGCCG
GAACCACGGAAACCCGTAATTCCGGCAACCTGGCCCTGCCGGCTTCGCCGTATCAGGTGATGGCCGGGACGGTCATCGCC
GGTGCGCTGGTGACGGGCATCAAGTCGGATTTGCCGGGCGATGTGATCGCCACGGTGACGGAGCCGGTCTATGACACGGC
CACCGGGCGCTTTCTGCTGATCCCGCAGGGTTCACGCATCCTGGGCCGCTACAACAGCCAGGTCAGCTACGGACAAAGCC
GCGTTCAAGTCGTCTGGAACCGGATCATCCTGCCCGACACGTCTTCGCTGACGCTCGACAACTTGGTCGGAGCCGACCCG
GCTGGCTATGCCGGGCTGGAAGATGACGTGGACTACCACTGGGGCCGCATCTTCGCCGGCGCGGCGCTGACCACGCTGCT
GGGCGTCGGCGCCGAGCTGGCCGCGCCCGAGAACCGCCAGGACGGCGACCGCATCATCATCGCCGGGCGCGACAGCGCGC
AGGACAGCATCAACCAGGTCGGCCAGGAGCTGACCCGGCGCAACATGAACATCCAGCCGACGCTGACCGAGCGGCCGGGC
CTACCGGTTCGCGTCATCGCCAACCGCGACTTGGTACTGCGGCCCTACCAGCCATTGTTCTTCAACAAAGGGACTTCGCG
ATGA

Upstream 100 bases:

>100_bases
TGGATCGCCTCTTTGGTGCGGCTGAACTGCGCTTGGGCGGCGATGGTAGTGACGTGGTGCGGATCGAGCGCACAGACGGC
GTGGCGCGGAGGAACTGACC

Downstream 100 bases:

>100_bases
CGACGCGCAAGCTGCGGCTCGGGCCGCTACCGAAAACGGAATCCACGAAGCTGACCTTTGCCTGCCCGGCCAGCCTGAAA
GCCGACCTCGACCGCTACGC

Product: conjugation TrbI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 426

Protein sequence:

>427_residues
MSQDDTPDLAAPQAAGKIAPEAVALRALPRPVTRLNRRTLAILTGGLSVAVLGALMWSLQPQRRGANEQAELYNVDRVSK
SEGLDALPADYSKLPSALPPTVPELGPPLPGDLGPAIVKSQQPVTAAYAAPGNDPNDALRKEAEAAAGSSVFFRSGTQKA
APVAQSQATAAPGFAANAAFDPMAAGPASTAAQPADLTAVQNRQDQKEAFQKAGTTETRNSGNLALPASPYQVMAGTVIA
GALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGRYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLVGADP
AGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGDRIIIAGRDSAQDSINQVGQELTRRNMNIQPTLTERPG
LPVRVIANRDLVLRPYQPLFFNKGTSR

Sequences:

>Translated_427_residues
MSQDDTPDLAAPQAAGKIAPEAVALRALPRPVTRLNRRTLAILTGGLSVAVLGALMWSLQPQRRGANEQAELYNVDRVSK
SEGLDALPADYSKLPSALPPTVPELGPPLPGDLGPAIVKSQQPVTAAYAAPGNDPNDALRKEAEAAAGSSVFFRSGTQKA
APVAQSQATAAPGFAANAAFDPMAAGPASTAAQPADLTAVQNRQDQKEAFQKAGTTETRNSGNLALPASPYQVMAGTVIA
GALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGRYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLVGADP
AGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGDRIIIAGRDSAQDSINQVGQELTRRNMNIQPTLTERPG
LPVRVIANRDLVLRPYQPLFFNKGTSR
>Mature_426_residues
SQDDTPDLAAPQAAGKIAPEAVALRALPRPVTRLNRRTLAILTGGLSVAVLGALMWSLQPQRRGANEQAELYNVDRVSKS
EGLDALPADYSKLPSALPPTVPELGPPLPGDLGPAIVKSQQPVTAAYAAPGNDPNDALRKEAEAAAGSSVFFRSGTQKAA
PVAQSQATAAPGFAANAAFDPMAAGPASTAAQPADLTAVQNRQDQKEAFQKAGTTETRNSGNLALPASPYQVMAGTVIAG
ALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGRYNSQVSYGQSRVQVVWNRIILPDTSSLTLDNLVGADPA
GYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQDGDRIIIAGRDSAQDSINQVGQELTRRNMNIQPTLTERPGL
PVRVIANRDLVLRPYQPLFFNKGTSR

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 44853; Mature: 44722

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQDDTPDLAAPQAAGKIAPEAVALRALPRPVTRLNRRTLAILTGGLSVAVLGALMWSLQ
CCCCCCCCCCCCCHHCCCCHHHHHHHHCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
PQRRGANEQAELYNVDRVSKSEGLDALPADYSKLPSALPPTVPELGPPLPGDLGPAIVKS
HHHCCCCCHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCC
QQPVTAAYAAPGNDPNDALRKEAEAAAGSSVFFRSGTQKAAPVAQSQATAAPGFAANAAF
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCC
DPMAAGPASTAAQPADLTAVQNRQDQKEAFQKAGTTETRNSGNLALPASPYQVMAGTVIA
CCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHH
GALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGRYNSQVSYGQSRVQVVWN
HHHHHHHHHCCCCCEEHHHHCCHHHCCCCCEEEEECCCHHHHHCCCCHHHCHHHHHHHHH
RIILPDTSSLTLDNLVGADPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQ
HEECCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
DGDRIIIAGRDSAQDSINQVGQELTRRNMNIQPTLTERPGLPVRVIANRDLVLRPYQPLF
CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCE
FNKGTSR
ECCCCCC
>Mature Secondary Structure 
SQDDTPDLAAPQAAGKIAPEAVALRALPRPVTRLNRRTLAILTGGLSVAVLGALMWSLQ
CCCCCCCCCCCCHHCCCCHHHHHHHHCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHCC
PQRRGANEQAELYNVDRVSKSEGLDALPADYSKLPSALPPTVPELGPPLPGDLGPAIVKS
HHHCCCCCHHHHHCCHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHCC
QQPVTAAYAAPGNDPNDALRKEAEAAAGSSVFFRSGTQKAAPVAQSQATAAPGFAANAAF
CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCCCCCCCC
DPMAAGPASTAAQPADLTAVQNRQDQKEAFQKAGTTETRNSGNLALPASPYQVMAGTVIA
CCCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHCCCCCCCCCCCEECCCCCHHHHHHHHHH
GALVTGIKSDLPGDVIATVTEPVYDTATGRFLLIPQGSRILGRYNSQVSYGQSRVQVVWN
HHHHHHHHHCCCCCEEHHHHCCHHHCCCCCEEEEECCCHHHHHCCCCHHHCHHHHHHHHH
RIILPDTSSLTLDNLVGADPAGYAGLEDDVDYHWGRIFAGAALTTLLGVGAELAAPENRQ
HEECCCCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCC
DGDRIIIAGRDSAQDSINQVGQELTRRNMNIQPTLTERPGLPVRVIANRDLVLRPYQPLF
CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCEEECCCCCCE
FNKGTSR
ECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]