| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is trbE [H]
Identifier: 115352058
GI number: 115352058
Start: 2202351
End: 2204801
Strand: Direct
Name: trbE [H]
Synonym: Bamb_2007
Alternate gene names: 115352058
Gene position: 2202351-2204801 (Clockwise)
Preceding gene: 115352057
Following gene: 115352059
Centisome position: 61.92
GC content: 65.97
Gene sequence:
>2451_bases ATGCTGAACCTTGCCGAATACCGCCAGCGCCCGGCCTTGCTCGCCGACTGGCTTCCGTGGGCCGGCTTGATCGCGCCGGG CGTGGTGCTGAACAAGGATGGCAGTTTCCAGCGTACAGCGCGCTTTCGCGGGCCTGATCTGGACAGCGCCACGCAAGGCG AACTGATCGCCACATCGGCGCGTCTCAACAACGCGCTTCGCCGCCTGGGTTCGGGCTGGGCCCTGTTCATTGAGGCCGAA CGCCGCCCGGCGGCGGACTACCCGCATTCCGATTTCCCCGAGCCGCTGTCCTGGCTCGTGGACGAGGAACGCCGCGCCGC CTTCGAGGAATCGGGGCATCACTTCGAGAGCGGCTATCACCTGACGCTGGCGCACCTGCCGCCCGAGGAATCACGCGCCC GCGCGGCCAAGCTGCTCTACGAGAACGCGCCCGGCGATGGCGTGGATTGGCATGGCCGGCTCGATGCCTTCGTGGCGGAA ACCGATCGTGTTTTCGACTTGCTCGATGGCGTGATGCCGGAGATCGCCCGGCTCGATGACGCCCAGACGCTGACCTACCT GCACGCCACGGTGTCCACGCGGCGCTACCGCGTGGGCGTACCTGAAGTGCCGTTCCATATCGACGCGCTGCTGGCCGACT CCGCGCTGGTCGGCGGCCTGGCGCCCACGCTGGGCGACCAGCACCTGCGCGTGGTGTCGGTGCGGGGCTTTCCGACCTCG ACCTGGCCGGGCCTGCTGGACGACCTCAACCGCCTGGGCTTTGCCTATCGCTGGAGCACGCGCTTTCTCTGCCTGGACAA AGCCGAAGCAGAAAAGGAACTCGGCCGCCTGCGCCGCCAGTGGTTTGCCAAGCGCAAGAACGTCGTCGCGCTGCTGCGCG AAACCATCTTCCAGCAGGAAAGCCCGCTGGTCGATACCGACGCGAGCAACAAGGCGGCCGACGCGGATGCCGCGATGCAG GAGCTGGGTGGCGATCAGGTCGCCTTCGGTTACTTCACTGCCACGGTGACGGTGCTCGATGCCGATTCAGCCGCGGCCGA CGAAAAGCTGCGCATGGTGGAGCGCGTCATCCAGGGCCGGGGTTTCGTGACCATCCCCGAGACGTTGAATGTCGTGGATG CGTGGCTGTCGTCCATCCCCGGCAATGCCTACGCGAATGTCCGCCAGCCCATCGTCTCGACGCTGAACTTGGCGCACATG ATGCCGCTGTCTGCGGTGTGGGCCGGGCCGGAGAAGAACGACCACCTCGACGGCCCGCCGCTGATCGTCACCCGCACCGA TGGTGCGACGCCGTTCCGGCTGGTGACACACATCGGCGACGTCGGCCACACGCTGGTCGCCGGGCCGACCGGCATGGGCA AGTCGGTGTTGCTTGCCATTCTGGTGCAGCAATTCCGCCGCTATCGCGGCTCTCGCGTGTTCGCTTTCGATATGGGCCGC TCGATGCGCGCCACCATCCTGGGCCTGGGCGGCGAGCACTACGACCTGGGTGCCGATGGCGGCATTGCCTTCCAGCCGCT CGCGCGTATCGACCGGGAAAGCTATCGCTCCTGGGCGGGGGAATGGGTGGAAGGCCGCCTGCTGCATGAGGGCGTGACGG TCGGCCCGGACGAGAAGGCGGTCATCTGGTCGGCGCTGGGCAGCTTGACCGGTGCGCCGGTCGAGCAACGCACGTTGACC GGGTTATCAGTACTGCTGCAATCGAACGCGCTACGGCAGGCACTCGCGCCTTATGTGCTCGGTGGCGCGCACGGCAAGCT ACTGGACGCGGACACCGATCGTCTCGGCTTCGGTGACGTACAGGGCTTCGAGATGGAAGAACTGATGCACAGCCCCGCCG CCGTGCAAGCGGTGCTGCGCTACCTGTTCGCCCGCTTCGATGAGCGTTTCGACGGTGCGCCCACGCTGCTGATTCTGGAT GAGGCGTGGCTGTTCCTCGATGAGCCGTCTTTCGCCGCGCGCATTCGCCAATGGTTGAAGACGCTGCGCAAGAAAAACGT GTCGGTGATCTTCGCCACGCAGTCGCTCGCCGATATCAAGGATTCGAGCATTGCGCCCGCGATCATCGAGAGCTGCCCGA GTCGGATTTTTCTCCCCAATCCGCAGGCCACCGAGCCGCAGATTCGCACGATCTACGAGGGCTTCGGCCTCAACAGCCGG CAAATCGAAATCGTCGCTACCGCCCAGCCCAAGCGCGACTACTACTACCAATCGCGCCTCGGCAATCGCCTGTTCGACCT TGATCTGGGTCCAGCCGCACTCGCCTTCGCGGGTGCATCTACTCCGCAAGACCAACGCGACATGGATCGCGTGCTGACGC AGGCCGGCGCTCCCGGCTTCGCCGGTGCGTGGCTGCGCCATCGCGGCCTCGACTGGGCCTCCGACCTGTTGCCGTCCTCA CCGGCGGCCGCTTCGTTCCTCAACTCCCAACCACTGGAGGTTTCGCCATGA
Upstream 100 bases:
>100_bases GCTGGCGGTGTGGGGCGCGCGCGTCGATCCGCAGTTCATGCAGGTCTTCGCCCGGCACATCAAGCACAAGCCGCTGCTGG ACGTGTAGGGGGACGCCGCC
Downstream 100 bases:
>100_bases AGATCCGTGTGCTTTCCGCTTCGCTCGCCGCCGCGCTGGCCGGCTCGCTGATGCTCGCTCAGCCGGCGGCGGCGCTGACC TTCGTTGATCCCGTCAACTT
Product: conjugal transfer ATPase TrbE
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 816; Mature: 816
Protein sequence:
>816_residues MLNLAEYRQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRPAADYPHSDFPEPLSWLVDEERRAAFEESGHHFESGYHLTLAHLPPEESRARAAKLLYENAPGDGVDWHGRLDAFVAE TDRVFDLLDGVMPEIARLDDAQTLTYLHATVSTRRYRVGVPEVPFHIDALLADSALVGGLAPTLGDQHLRVVSVRGFPTS TWPGLLDDLNRLGFAYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQESPLVDTDASNKAADADAAMQ ELGGDQVAFGYFTATVTVLDADSAAADEKLRMVERVIQGRGFVTIPETLNVVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPLSAVWAGPEKNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAILVQQFRRYRGSRVFAFDMGR SMRATILGLGGEHYDLGADGGIAFQPLARIDRESYRSWAGEWVEGRLLHEGVTVGPDEKAVIWSALGSLTGAPVEQRTLT GLSVLLQSNALRQALAPYVLGGAHGKLLDADTDRLGFGDVQGFEMEELMHSPAAVQAVLRYLFARFDERFDGAPTLLILD EAWLFLDEPSFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCPSRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLTQAGAPGFAGAWLRHRGLDWASDLLPSS PAAASFLNSQPLEVSP
Sequences:
>Translated_816_residues MLNLAEYRQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRPAADYPHSDFPEPLSWLVDEERRAAFEESGHHFESGYHLTLAHLPPEESRARAAKLLYENAPGDGVDWHGRLDAFVAE TDRVFDLLDGVMPEIARLDDAQTLTYLHATVSTRRYRVGVPEVPFHIDALLADSALVGGLAPTLGDQHLRVVSVRGFPTS TWPGLLDDLNRLGFAYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQESPLVDTDASNKAADADAAMQ ELGGDQVAFGYFTATVTVLDADSAAADEKLRMVERVIQGRGFVTIPETLNVVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPLSAVWAGPEKNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAILVQQFRRYRGSRVFAFDMGR SMRATILGLGGEHYDLGADGGIAFQPLARIDRESYRSWAGEWVEGRLLHEGVTVGPDEKAVIWSALGSLTGAPVEQRTLT GLSVLLQSNALRQALAPYVLGGAHGKLLDADTDRLGFGDVQGFEMEELMHSPAAVQAVLRYLFARFDERFDGAPTLLILD EAWLFLDEPSFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCPSRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLTQAGAPGFAGAWLRHRGLDWASDLLPSS PAAASFLNSQPLEVSP >Mature_816_residues MLNLAEYRQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSARLNNALRRLGSGWALFIEAE RRPAADYPHSDFPEPLSWLVDEERRAAFEESGHHFESGYHLTLAHLPPEESRARAAKLLYENAPGDGVDWHGRLDAFVAE TDRVFDLLDGVMPEIARLDDAQTLTYLHATVSTRRYRVGVPEVPFHIDALLADSALVGGLAPTLGDQHLRVVSVRGFPTS TWPGLLDDLNRLGFAYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQESPLVDTDASNKAADADAAMQ ELGGDQVAFGYFTATVTVLDADSAAADEKLRMVERVIQGRGFVTIPETLNVVDAWLSSIPGNAYANVRQPIVSTLNLAHM MPLSAVWAGPEKNDHLDGPPLIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAILVQQFRRYRGSRVFAFDMGR SMRATILGLGGEHYDLGADGGIAFQPLARIDRESYRSWAGEWVEGRLLHEGVTVGPDEKAVIWSALGSLTGAPVEQRTLT GLSVLLQSNALRQALAPYVLGGAHGKLLDADTDRLGFGDVQGFEMEELMHSPAAVQAVLRYLFARFDERFDGAPTLLILD EAWLFLDEPSFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCPSRIFLPNPQATEPQIRTIYEGFGLNSR QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLTQAGAPGFAGAWLRHRGLDWASDLLPSS PAAASFLNSQPLEVSP
Specific function: Unknown
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 89682; Mature: 89682
Theoretical pI: Translated: 5.54; Mature: 5.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNLAEYRQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEECCCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRPAADYPHSDFPEPLSWLVDEERRAAFEESGHHFESGYH HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHCCCEECCCCE LTLAHLPPEESRARAAKLLYENAPGDGVDWHGRLDAFVAETDRVFDLLDGVMPEIARLDD EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC AQTLTYLHATVSTRRYRVGVPEVPFHIDALLADSALVGGLAPTLGDQHLRVVSVRGFPTS CHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC TWPGLLDDLNRLGFAYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDASNKAADADAAMQELGGDQVAFGYFTATVTVLDADSAAADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCC GFVTIPETLNVVDAWLSSIPGNAYANVRQPIVSTLNLAHMMPLSAVWAGPEKNDHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAILVQQFRRYRGSRVFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SMRATILGLGGEHYDLGADGGIAFQPLARIDRESYRSWAGEWVEGRLLHEGVTVGPDEKA CCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCH VIWSALGSLTGAPVEQRTLTGLSVLLQSNALRQALAPYVLGGAHGKLLDADTDRLGFGDV HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC QGFEMEELMHSPAAVQAVLRYLFARFDERFDGAPTLLILDEAWLFLDEPSFAARIRQWLK CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCPSRIFLPNPQATEPQIRTIYEGFGLNSR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHCCCCEECCCCCCCCCHHHHHHHHCCCCCC QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLTQAGAPGF EEEEEEECCCCHHHHHHHHHCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC AGAWLRHRGLDWASDLLPSSPAAASFLNSQPLEVSP HHHHHHHCCCCHHHHHCCCCCHHHHHHCCCCCCCCC >Mature Secondary Structure MLNLAEYRQRPALLADWLPWAGLIAPGVVLNKDGSFQRTARFRGPDLDSATQGELIATSA CCCHHHHHCCCCHHHHHCCHHHHHCCCEEECCCCCCHHHHHCCCCCCCCCCCCCEEEHHH RLNNALRRLGSGWALFIEAERRPAADYPHSDFPEPLSWLVDEERRAAFEESGHHFESGYH HHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCHHHHHHCHHHHHHHHHCCCEECCCCE LTLAHLPPEESRARAAKLLYENAPGDGVDWHGRLDAFVAETDRVFDLLDGVMPEIARLDD EEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC AQTLTYLHATVSTRRYRVGVPEVPFHIDALLADSALVGGLAPTLGDQHLRVVSVRGFPTS CHHHHHHHHHHHCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC TWPGLLDDLNRLGFAYRWSTRFLCLDKAEAEKELGRLRRQWFAKRKNVVALLRETIFQQE CCCHHHHHHHHCCEEEEECCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC SPLVDTDASNKAADADAAMQELGGDQVAFGYFTATVTVLDADSAAADEKLRMVERVIQGR CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHCC GFVTIPETLNVVDAWLSSIPGNAYANVRQPIVSTLNLAHMMPLSAVWAGPEKNDHLDGPP CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCC LIVTRTDGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLAILVQQFRRYRGSRVFAFDMGR EEEEECCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC SMRATILGLGGEHYDLGADGGIAFQPLARIDRESYRSWAGEWVEGRLLHEGVTVGPDEKA CCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCH VIWSALGSLTGAPVEQRTLTGLSVLLQSNALRQALAPYVLGGAHGKLLDADTDRLGFGDV HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCC QGFEMEELMHSPAAVQAVLRYLFARFDERFDGAPTLLILDEAWLFLDEPSFAARIRQWLK CCCCHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCHHHHHHHHHHH TLRKKNVSVIFATQSLADIKDSSIAPAIIESCPSRIFLPNPQATEPQIRTIYEGFGLNSR HHHHCCCEEEEEECHHHHCCCCCCCHHHHHHCCCCEECCCCCCCCCHHHHHHHHCCCCCC QIEIVATAQPKRDYYYQSRLGNRLFDLDLGPAALAFAGASTPQDQRDMDRVLTQAGAPGF EEEEEEECCCCHHHHHHHHHCCEEEECCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCC AGAWLRHRGLDWASDLLPSSPAAASFLNSQPLEVSP HHHHHHHCCCCHHHHHCCCCCHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8763954 [H]