| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351939
Identifier: 115351939
GI number: 115351939
Start: 2070856
End: 2071785
Strand: Direct
Name: 115351939
Synonym: Bamb_1888
Alternate gene names: NA
Gene position: 2070856-2071785 (Clockwise)
Preceding gene: 115351938
Following gene: 115351941
Centisome position: 58.23
GC content: 55.81
Gene sequence:
>930_bases ATGAGCAAGATGCTGTATCGGTTTGCGTTCGTCGCGACATTTATCTGGGCCGCTTCGGTCAACGCAGCCGAGGTGCTAAG CACCGCCACCGCCCACACAGCGCGCGACATGTGGCATCAATACATGGATACGCACGGAGACTGCGGCAGCAATACCGCTC CCGTATTTTTATGCACCGGCATCATCATTCGCGAAACCGTACCGGGGCCAGGCTATTATTCGTGGCAACCTTCTCCTGAA GACGTGGCAACCGGTCGCGTCTCGTTTTCCTATCTTCGTAAAGACGCAAAATTCGGCGGATTCAAGAACGGTGGCTCGAA CGGCTTCACGCTGTTTCCGGTTCTGGGACCGTACAAAGGGCCGGCGGACAAAACGAAGCTTGAGGTACTGTGCGCTTTTC CCATGGACGGCTGGACCGACCGCCGATCGACGGACCATGGGTGCGGACCGACGCAAACGTTCCCTGCGCAGAGCGTCCTT TGTCAGCAGCAAGGGATCGTTACCGCTGAAGCATGGTTGAACCATTGGAACGCGGCGCCTGCTGGAAGTAATAGAAACCT TTATCAATGCGGTTTCGATGTGCGGCACGGTTCACCCTTTGGTGATACAACCGGTGCATTTAACCAGTTGATCAGGGCAA TGCAACTACTGGGCGAGACCGAGTTCCACGACCACAATGAGCTCGTGATCGACGCGTGGCCGGCAAACCTCAATCCCGCA GAGCTACCGATTCAATCGTTCTTCTATGTGGCGAGCGGTTCGGAGGCCGGTGGCCAAGCGCTCGCGAATGCGCAAAAGGA TCAGAAGGATTATTACGACGTCACCAACGGCGACTTCGTCCCGATCGTCCGTATCACTCCACCGCAGTCGATGAGTGACG ACTACGATTTTCATTTCAGACCGGAAGATCAAGCCGTTCCGATTCCGTAA
Upstream 100 bases:
>100_bases CCATTTTAGTGATTGGGAATAACGTCCGTTCATCCATTAAATGCCGGCGTATGGATACGACAAACATAAAGAGCCGGTGC TTGGTCGGTGGAGGAGATAG
Downstream 100 bases:
>100_bases GTCGGCTCACGGGCAGGTAAGGTAACCACACGTGGGGGCCCGCCCGCCGCAGCGCGATTCGAAACAGGCACGTGGCGCGG GTTCTTCTCGCGCTGCGGCT
Product: HvnB; halovibrin
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MSKMLYRFAFVATFIWAASVNAAEVLSTATAHTARDMWHQYMDTHGDCGSNTAPVFLCTGIIIRETVPGPGYYSWQPSPE DVATGRVSFSYLRKDAKFGGFKNGGSNGFTLFPVLGPYKGPADKTKLEVLCAFPMDGWTDRRSTDHGCGPTQTFPAQSVL CQQQGIVTAEAWLNHWNAAPAGSNRNLYQCGFDVRHGSPFGDTTGAFNQLIRAMQLLGETEFHDHNELVIDAWPANLNPA ELPIQSFFYVASGSEAGGQALANAQKDQKDYYDVTNGDFVPIVRITPPQSMSDDYDFHFRPEDQAVPIP
Sequences:
>Translated_309_residues MSKMLYRFAFVATFIWAASVNAAEVLSTATAHTARDMWHQYMDTHGDCGSNTAPVFLCTGIIIRETVPGPGYYSWQPSPE DVATGRVSFSYLRKDAKFGGFKNGGSNGFTLFPVLGPYKGPADKTKLEVLCAFPMDGWTDRRSTDHGCGPTQTFPAQSVL CQQQGIVTAEAWLNHWNAAPAGSNRNLYQCGFDVRHGSPFGDTTGAFNQLIRAMQLLGETEFHDHNELVIDAWPANLNPA ELPIQSFFYVASGSEAGGQALANAQKDQKDYYDVTNGDFVPIVRITPPQSMSDDYDFHFRPEDQAVPIP >Mature_308_residues SKMLYRFAFVATFIWAASVNAAEVLSTATAHTARDMWHQYMDTHGDCGSNTAPVFLCTGIIIRETVPGPGYYSWQPSPED VATGRVSFSYLRKDAKFGGFKNGGSNGFTLFPVLGPYKGPADKTKLEVLCAFPMDGWTDRRSTDHGCGPTQTFPAQSVLC QQQGIVTAEAWLNHWNAAPAGSNRNLYQCGFDVRHGSPFGDTTGAFNQLIRAMQLLGETEFHDHNELVIDAWPANLNPAE LPIQSFFYVASGSEAGGQALANAQKDQKDYYDVTNGDFVPIVRITPPQSMSDDYDFHFRPEDQAVPIP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33981; Mature: 33850
Theoretical pI: Translated: 5.09; Mature: 5.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKMLYRFAFVATFIWAASVNAAEVLSTATAHTARDMWHQYMDTHGDCGSNTAPVFLCTG CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC IIIRETVPGPGYYSWQPSPEDVATGRVSFSYLRKDAKFGGFKNGGSNGFTLFPVLGPYKG EEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC PADKTKLEVLCAFPMDGWTDRRSTDHGCGPTQTFPAQSVLCQQQGIVTAEAWLNHWNAAP CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEHHHHHHHCCCCC AGSNRNLYQCGFDVRHGSPFGDTTGAFNQLIRAMQLLGETEFHDHNELVIDAWPANLNPA CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHH ELPIQSFFYVASGSEAGGQALANAQKDQKDYYDVTNGDFVPIVRITPPQSMSDDYDFHFR HCCHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEC PEDQAVPIP CCCCCCCCC >Mature Secondary Structure SKMLYRFAFVATFIWAASVNAAEVLSTATAHTARDMWHQYMDTHGDCGSNTAPVFLCTG CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC IIIRETVPGPGYYSWQPSPEDVATGRVSFSYLRKDAKFGGFKNGGSNGFTLFPVLGPYKG EEEEECCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCC PADKTKLEVLCAFPMDGWTDRRSTDHGCGPTQTFPAQSVLCQQQGIVTAEAWLNHWNAAP CCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEHHHHHHHCCCCC AGSNRNLYQCGFDVRHGSPFGDTTGAFNQLIRAMQLLGETEFHDHNELVIDAWPANLNPA CCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCHH ELPIQSFFYVASGSEAGGQALANAQKDQKDYYDVTNGDFVPIVRITPPQSMSDDYDFHFR HCCHHHEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCEEEC PEDQAVPIP CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA