| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351896
Identifier: 115351896
GI number: 115351896
Start: 2031059
End: 2031466
Strand: Direct
Name: 115351896
Synonym: Bamb_1845
Alternate gene names: NA
Gene position: 2031059-2031466 (Clockwise)
Preceding gene: 115351895
Following gene: 115351897
Centisome position: 57.11
GC content: 66.67
Gene sequence:
>408_bases ATGGCCCGAGCCATGATCTGCGTCGGCGACACGACGACGCACGGGGGCCGCGTGCTGGAGGGCACCGCGACCGCCACCAT TGACGGGAAACCCATCGCCGGCGTCGGACACAAGGTACTTTGCCCACAATGCAAAGGCGTCTTTCCGATCCTGCCCGCGA CGGGACGGCGCTACCCGCATCAAATCGCCGGCCGGGAAACCGCCATCGAAGGCATGAAGACCGCTTGCGGGGCGACGCTG ATCGCCTCGCAATCGTCCGCGACACTCGACGACGTCGGAGCCGGTGAAGCGACGACGGGCGCTGCAGTCGCCAACGCTGC AGCAGCGCTGGCCCCTTCACCTACGCTCTGCCTCGAATGCCTGAAGTCCGCGGCCGAAAATGCTGCAACGATGATCGCGC GCGGGTAG
Upstream 100 bases:
>100_bases TCGATTAACAATCGTTGACCGACTGCGCGACGGCCAGCGGCTGCTCCCCCTCTTCCGGAAATGGTAAATTCATACGAAAA CCACACCTACGAGAGAACAT
Downstream 100 bases:
>100_bases AACCATGACCGGCAATTCGATCGAAGCGTTCTACTTCACGCGGCAACAGCAGTTGACCATGCAGGTGCACTTGTACGCGC TGGTCGACGGTCTCCTGTTC
Product: PAAR repeat-containing protein
Products: NA
Alternate protein names: PAAR Motif Family; Bacteriophage; PAAR Motif Family Protein; PaaR Motif-Containing Protein; Paar Repeat-Containing Protein; PAAR Motif-Containing Protein
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MARAMICVGDTTTHGGRVLEGTATATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPHQIAGRETAIEGMKTACGATL IASQSSATLDDVGAGEATTGAAVANAAAALAPSPTLCLECLKSAAENAATMIARG
Sequences:
>Translated_135_residues MARAMICVGDTTTHGGRVLEGTATATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPHQIAGRETAIEGMKTACGATL IASQSSATLDDVGAGEATTGAAVANAAAALAPSPTLCLECLKSAAENAATMIARG >Mature_134_residues ARAMICVGDTTTHGGRVLEGTATATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPHQIAGRETAIEGMKTACGATLI ASQSSATLDDVGAGEATTGAAVANAAAALAPSPTLCLECLKSAAENAATMIARG
Specific function: Unknown
COG id: COG4104
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13391; Mature: 13259
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.4 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 7.4 %Cys+Met (Translated Protein) 4.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 6.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARAMICVGDTTTHGGRVLEGTATATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPH CCCEEEEECCCCCCCCEEEECCEEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCCCCH QIAGRETAIEGMKTACGATLIASQSSATLDDVGAGEATTGAAVANAAAALAPSPTLCLEC HHCCCHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH LKSAAENAATMIARG HHHHHHHHHHHEECC >Mature Secondary Structure ARAMICVGDTTTHGGRVLEGTATATIDGKPIAGVGHKVLCPQCKGVFPILPATGRRYPH CCEEEEECCCCCCCCEEEECCEEEEECCCCCCCCCCEEECCCCCCCEECCCCCCCCCCH QIAGRETAIEGMKTACGATLIASQSSATLDDVGAGEATTGAAVANAAAALAPSPTLCLEC HHCCCHHHHHHHHHHHCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHH LKSAAENAATMIARG HHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA