| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351845
Identifier: 115351845
GI number: 115351845
Start: 1982850
End: 1983365
Strand: Direct
Name: 115351845
Synonym: Bamb_1794
Alternate gene names: NA
Gene position: 1982850-1983365 (Clockwise)
Preceding gene: 115351838
Following gene: 115351846
Centisome position: 55.75
GC content: 67.25
Gene sequence:
>516_bases TTGGCCGACTTTCGCAATGCACCATGGCCGCTGCGGGCCCGCGCCGTCAGGCGTCCCGTATGCGCCGGCTCGCGAAATCG GCCGCCCGGGCCCGTGCGGCCCGTGCCAGACACTCCCCTACGGAAACCGCGGATTAACGATTTGAAACTGCACCAGGACA CGAGCGGCGCGCTCAACACCGTCACCGGCTACGGCCCCGATTATGTCGACGTCAACCTCCAACGCCACGAAGGGAGCGTC ATCGTACTGCCCGGCGCACCGGTGCGGGAATGGCCGGTGTCGTCGTTCGACGCACTCGCGCCCGAGCATTTCGCGATGCT GCTCGACCCGGCGCCCGAACTCGTGATCTTCGGCAGCGGCGCACGGCTGCGCTTCCCGCACCCGCGGCTCGTGGCCGCGC TCACGGCCAAGCGAATCGGCGTCGAGACGATGGATTTCCAGGCCGCCTGCCGCACCTACAACATCCTGATGGCCGAGGGC CGCAAAGTCGCCGCCGCGCTCTTAATTGAACGTTAA
Upstream 100 bases:
>100_bases TGTCTAGACTGGGAAAAAGCGGGCGGTCGGACGGCGCTTGTGACGACGCACGACGCAAGTGGCGCCCGGGGGCGACCAAA AAGTTATAATTTAGCGGATT
Downstream 100 bases:
>100_bases TCCCCGATGCGGTAAAACACGGGCCGGCGCACCGGGTCGATCCCCGGATCATCACCGGATCGATACCCGGCAGGCCGCCC GCCGCCGGCGTAACCCGCCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 171; Mature: 170
Protein sequence:
>171_residues MADFRNAPWPLRARAVRRPVCAGSRNRPPGPVRPVPDTPLRKPRINDLKLHQDTSGALNTVTGYGPDYVDVNLQRHEGSV IVLPGAPVREWPVSSFDALAPEHFAMLLDPAPELVIFGSGARLRFPHPRLVAALTAKRIGVETMDFQAACRTYNILMAEG RKVAAALLIER
Sequences:
>Translated_171_residues MADFRNAPWPLRARAVRRPVCAGSRNRPPGPVRPVPDTPLRKPRINDLKLHQDTSGALNTVTGYGPDYVDVNLQRHEGSV IVLPGAPVREWPVSSFDALAPEHFAMLLDPAPELVIFGSGARLRFPHPRLVAALTAKRIGVETMDFQAACRTYNILMAEG RKVAAALLIER >Mature_170_residues ADFRNAPWPLRARAVRRPVCAGSRNRPPGPVRPVPDTPLRKPRINDLKLHQDTSGALNTVTGYGPDYVDVNLQRHEGSVI VLPGAPVREWPVSSFDALAPEHFAMLLDPAPELVIFGSGARLRFPHPRLVAALTAKRIGVETMDFQAACRTYNILMAEGR KVAAALLIER
Specific function: Unknown
COG id: COG3737
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18817; Mature: 18686
Theoretical pI: Translated: 10.59; Mature: 10.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADFRNAPWPLRARAVRRPVCAGSRNRPPGPVRPVPDTPLRKPRINDLKLHQDTSGALNT CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEC VTGYGPDYVDVNLQRHEGSVIVLPGAPVREWPVSSFDALAPEHFAMLLDPAPELVIFGSG CCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEECCC ARLRFPHPRLVAALTAKRIGVETMDFQAACRTYNILMAEGRKVAAALLIER CEEECCCCHHHHHHHHHHCCCEECCHHHHHHEEEEEEECCCEEEEEEEECC >Mature Secondary Structure ADFRNAPWPLRARAVRRPVCAGSRNRPPGPVRPVPDTPLRKPRINDLKLHQDTSGALNT CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEC VTGYGPDYVDVNLQRHEGSVIVLPGAPVREWPVSSFDALAPEHFAMLLDPAPELVIFGSG CCCCCCCEEEEEEEECCCCEEEECCCCCCCCCCCCHHHCCCCCEEEEECCCCCEEEECCC ARLRFPHPRLVAALTAKRIGVETMDFQAACRTYNILMAEGRKVAAALLIER CEEECCCCHHHHHHHHHHCCCEECCHHHHHHEEEEEEECCCEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA