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The map label for this gene is yhcA [H]

Identifier: 115351730

GI number: 115351730

Start: 1854237

End: 1854974

Strand: Direct

Name: yhcA [H]

Synonym: Bamb_1678

Alternate gene names: 115351730

Gene position: 1854237-1854974 (Clockwise)

Preceding gene: 115351729

Following gene: 115351731

Centisome position: 52.14

GC content: 66.12

Gene sequence:

>738_bases
ATGAAATTCCCTGCACGCCATACCCTGCGGGCGTCGTTGCTCGCCCCGCTCCTCGGTTGCCTGATCGGTTCGAGCGTCGT
ACACGCGATGGGCGTCGTGCCCGAGACGTCCGTGGTGATCGTCGACGAAGCCGACGGCGAAGGAACGATCTCGGTCAGGA
ACACCGACACCCACCCGACACTCCTGCATACGACGGTCGAGCCCATCCCCGAGGACAAGGCCGAGCTCCTCATCGTGACG
CCCCCGATCGCGCGTGTCGAAGGCGGTGCGGTGCAGCTCGTCCGGTTCGTTCTCGCCGGCAACGAGCCGCTCGTCACGCA
ACGCCTCGCCCGCGTATCGTTCTCCGGCATTCCGCCGAAACGCCAGAACAAAAACGAGATCCAGACGATCATTCGCCAGA
ACCTGCCGGTGCTGATCCAGCCGCAAGACCTCGCGCGCAACGACCGGCCATGGGAACTGCTGAAGTGGTCGATCGAGGAC
GGCAAGCTGATCGTGCGCAACGACAGCCGCTATGTGGTGCGTCTCGAACAGAAAGTGCAGTTGCTGCCGTCGGGGCAGAT
CGTGTCGCTGCCGGCACCCTACGTACTCGCCGGACAGACCCGCCGGATCGCGCTGGCCCGCGAGGCCGCGACGCCGGAGC
GCGTGCGCCTCTTCCCCGCCACCGTCTACGGCTACTCGGTCGATCACTACGACGCAGCGCTTGCCCCTGCTGCGGCCGCT
GCGGCCACGCAACGGTAA

Upstream 100 bases:

>100_bases
TTTCCTCCGATCGCGTCGATTGCCTGACAGGCATCGACCGCACCGCCGCTTCGCCGAAGCGGCGGCGCGCAGCACGATTA
CCGCCTAACCTGCCACCGCC

Downstream 100 bases:

>100_bases
GCACCGCGTCTTCGATTCCGGATCTGCGATGTCAGGTGCCATTCGTGGCCCGCGCGGCCTCTTCGCGCTCGGGCTGTCCG
CCGTCGCGAGCTGCATGCCG

Product: putative periplasmic chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MKFPARHTLRASLLAPLLGCLIGSSVVHAMGVVPETSVVIVDEADGEGTISVRNTDTHPTLLHTTVEPIPEDKAELLIVT
PPIARVEGGAVQLVRFVLAGNEPLVTQRLARVSFSGIPPKRQNKNEIQTIIRQNLPVLIQPQDLARNDRPWELLKWSIED
GKLIVRNDSRYVVRLEQKVQLLPSGQIVSLPAPYVLAGQTRRIALAREAATPERVRLFPATVYGYSVDHYDAALAPAAAA
AATQR

Sequences:

>Translated_245_residues
MKFPARHTLRASLLAPLLGCLIGSSVVHAMGVVPETSVVIVDEADGEGTISVRNTDTHPTLLHTTVEPIPEDKAELLIVT
PPIARVEGGAVQLVRFVLAGNEPLVTQRLARVSFSGIPPKRQNKNEIQTIIRQNLPVLIQPQDLARNDRPWELLKWSIED
GKLIVRNDSRYVVRLEQKVQLLPSGQIVSLPAPYVLAGQTRRIALAREAATPERVRLFPATVYGYSVDHYDAALAPAAAA
AATQR
>Mature_245_residues
MKFPARHTLRASLLAPLLGCLIGSSVVHAMGVVPETSVVIVDEADGEGTISVRNTDTHPTLLHTTVEPIPEDKAELLIVT
PPIARVEGGAVQLVRFVLAGNEPLVTQRLARVSFSGIPPKRQNKNEIQTIIRQNLPVLIQPQDLARNDRPWELLKWSIED
GKLIVRNDSRYVVRLEQKVQLLPSGQIVSLPAPYVLAGQTRRIALAREAATPERVRLFPATVYGYSVDHYDAALAPAAAA
AATQR

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789609, Length=203, Percent_Identity=42.8571428571429, Blast_Score=166, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR016148
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26770; Mature: 26770

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFPARHTLRASLLAPLLGCLIGSSVVHAMGVVPETSVVIVDEADGEGTISVRNTDTHPT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCE
LLHTTVEPIPEDKAELLIVTPPIARVEGGAVQLVRFVLAGNEPLVTQRLARVSFSGIPPK
EEEEECCCCCCCCCCEEEECCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
RQNKNEIQTIIRQNLPVLIQPQDLARNDRPWELLKWSIEDGKLIVRNDSRYVVRLEQKVQ
CCCHHHHHHHHHCCCCEEECCHHHCCCCCCCEEEEEEECCCEEEEEECCEEEEEEEEEHE
LLPSGQIVSLPAPYVLAGQTRRIALAREAATPERVRLFPATVYGYSVDHYDAALAPAAAA
ECCCCCEEECCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH
AATQR
HHCCC
>Mature Secondary Structure
MKFPARHTLRASLLAPLLGCLIGSSVVHAMGVVPETSVVIVDEADGEGTISVRNTDTHPT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCCE
LLHTTVEPIPEDKAELLIVTPPIARVEGGAVQLVRFVLAGNEPLVTQRLARVSFSGIPPK
EEEEECCCCCCCCCCEEEECCCHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCC
RQNKNEIQTIIRQNLPVLIQPQDLARNDRPWELLKWSIEDGKLIVRNDSRYVVRLEQKVQ
CCCHHHHHHHHHCCCCEEECCHHHCCCCCCCEEEEEEECCCEEEEEECCEEEEEEEEEHE
LLPSGQIVSLPAPYVLAGQTRRIALAREAATPERVRLFPATVYGYSVDHYDAALAPAAAA
ECCCCCEEECCCCEEEECCCEEEEEECCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHH
AATQR
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1447980; 9278503 [H]