| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351612
Identifier: 115351612
GI number: 115351612
Start: 1728107
End: 1728715
Strand: Direct
Name: 115351612
Synonym: Bamb_1559
Alternate gene names: NA
Gene position: 1728107-1728715 (Clockwise)
Preceding gene: 115351611
Following gene: 115351613
Centisome position: 48.59
GC content: 74.55
Gene sequence:
>609_bases GTGCCGGGGACGGCACGCGCCGGCACGGCCGTGGCGTGGCCGGCGACGCTCGCCGCGAAGCGCGGCGGCCCGCTGCACGC CGGCCATCTGCGTTTTCGCAAACAGGCCGGCGCCCCGCGCGCGCTCCATTGCTTCGTGCTCGACTGTTCGGCGTCGATGT TGTCGCACGAACGGCTCGCGCTCGCAAAAGGGTTGATCGTCGCGTACTTCGACCAGGCCGCACGCGACCGCGTGGAAACC GCGCTGATCTGCTTCGGCGGCAACGGCGCCGCGCGGCGTTTCGGCCCGGCCGTGCCGCGCTGGTGGAACGCGCGCTGGCT CGAGCCGGTGGACGGCGGCGGCGGCACGCCGCTCGCGGACGGCATCGCGGCCGCCGCGCAACTGCTCGCGCGCGCGGCAC GGCGTACGCCGGACCAGCAGCGCTGGCTGTGGGTGCTGTCCGACGGACGCACGCGCGAAACGGCACCGAAACCGGCGGCC GCCGATCACGTCGTGTTCGTCGATTTCGATGACGCGGCCGTGCGGATCGGGCAGGGCAGGCGGCTCGCCGACGCATGGGG CGCGCAATGGACGACGGCCGCGTCGCTGTGCCCCGGGGTGACCGGCTGA
Upstream 100 bases:
>100_bases GCGTGGTGCCGCTGCCGCTAAAAAAACGCTGAGCCATCGAGCGGACGCCGCCGCGAACGCCGTTCGCGGTCCTCGATGGC AGCCAGGCGCCGCCGCGCGC
Downstream 100 bases:
>100_bases TCGGCTGATTGGCTGATTGGCTGATTGGCTGATCCGGTTGACCGGTTGACCGGTTGATCGAAACAGCGACCGCGCGGGAC GATCGCCGGCGCTGCGCTAT
Product: Mg-chelatase subunit ChlD-like protein
Products: NA
Alternate protein names: Magnesium Chelatase Subunit ChlD; Protoporphyrin IX Magnesium Chelatase
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MPGTARAGTAVAWPATLAAKRGGPLHAGHLRFRKQAGAPRALHCFVLDCSASMLSHERLALAKGLIVAYFDQAARDRVET ALICFGGNGAARRFGPAVPRWWNARWLEPVDGGGGTPLADGIAAAAQLLARAARRTPDQQRWLWVLSDGRTRETAPKPAA ADHVVFVDFDDAAVRIGQGRRLADAWGAQWTTAASLCPGVTG
Sequences:
>Translated_202_residues MPGTARAGTAVAWPATLAAKRGGPLHAGHLRFRKQAGAPRALHCFVLDCSASMLSHERLALAKGLIVAYFDQAARDRVET ALICFGGNGAARRFGPAVPRWWNARWLEPVDGGGGTPLADGIAAAAQLLARAARRTPDQQRWLWVLSDGRTRETAPKPAA ADHVVFVDFDDAAVRIGQGRRLADAWGAQWTTAASLCPGVTG >Mature_201_residues PGTARAGTAVAWPATLAAKRGGPLHAGHLRFRKQAGAPRALHCFVLDCSASMLSHERLALAKGLIVAYFDQAARDRVETA LICFGGNGAARRFGPAVPRWWNARWLEPVDGGGGTPLADGIAAAAQLLARAARRTPDQQRWLWVLSDGRTRETAPKPAAA DHVVFVDFDDAAVRIGQGRRLADAWGAQWTTAASLCPGVTG
Specific function: Unknown
COG id: COG1240
COG function: function code H; Mg-chelatase subunit ChlD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21439; Mature: 21307
Theoretical pI: Translated: 11.01; Mature: 11.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGTARAGTAVAWPATLAAKRGGPLHAGHLRFRKQAGAPRALHCFVLDCSASMLSHERLA CCCCCCCCCEEECHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH LAKGLIVAYFDQAARDRVETALICFGGNGAARRFGPAVPRWWNARWLEPVDGGGGTPLAD HHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHCCCCCCCCCCCEECCCCCCCCCCCHHH GIAAAAQLLARAARRTPDQQRWLWVLSDGRTRETAPKPAAADHVVFVDFDDAAVRIGQGR HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCC RLADAWGAQWTTAASLCPGVTG EEHHHHCCCHHHHHHCCCCCCC >Mature Secondary Structure PGTARAGTAVAWPATLAAKRGGPLHAGHLRFRKQAGAPRALHCFVLDCSASMLSHERLA CCCCCCCCEEECHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEEEECCHHHHHHHHHH LAKGLIVAYFDQAARDRVETALICFGGNGAARRFGPAVPRWWNARWLEPVDGGGGTPLAD HHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHCCCCCCCCCCCEECCCCCCCCCCCHHH GIAAAAQLLARAARRTPDQQRWLWVLSDGRTRETAPKPAAADHVVFVDFDDAAVRIGQGR HHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEECCCC RLADAWGAQWTTAASLCPGVTG EEHHHHCCCHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA