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The map label for this gene is yfcS [H]

Identifier: 115351578

GI number: 115351578

Start: 1678272

End: 1679018

Strand: Direct

Name: yfcS [H]

Synonym: Bamb_1525

Alternate gene names: 115351578

Gene position: 1678272-1679018 (Clockwise)

Preceding gene: 115351577

Following gene: 115351579

Centisome position: 47.19

GC content: 66.4

Gene sequence:

>747_bases
ATGAACCCTGTTTTCTCTCTTTCCTTCCCGCGCCGCGCGGCGTGCATGCTGACCGCGGCCAGCGCGCTGCTCGCAGGCGT
CGCGCACGCGGCGATCGTGCCGGACCGCACGCGCGTGATCTTCAACGAAGGCGAACCGGCCGCGATCGTCACGATCACCA
ACAAGAGCACGACGTATCCGTATCTCGTGCAGTCGTGGCTCGAGGACACGCGCGGCAACAAGATCACGTCGCCGCTGATG
GTCGTGCCGCCGCTGCAGCGCGTCGAGGCGAACGAGCGCAACGTGCTGCGCATCGCGAAGCTGCCCGGGGCCGCGCTGCC
GGCCGATCGCGAATCGGTGTTCTATCTGAACATCCGCGAAGTGCCGCCGAAGACCGATACGCCGAATACGCTGCAGATCG
CGCTGCATACGCAGATGAAGCTGTTCTATCGGCCGAAGGGCGTGCAGCCGGCGCGCGACGAGGACTGGACGCTGCCGATG
ACGCTGCGCGTCGACGCGGCCGCGCACCGGCTCGTGTTCGACAATCCGACGCCGTACCACGTGACGGTGGTCGACGTGAC
GGCGGGCGCGCAGAAGACGCCGGTGCCGATCGAGCCCGTGATGGTGGACCCGATGAGCACGGCCGACGTGCCGTTCAAGG
CCGCGACGCCGTCGACGCTGTTCATCACGCATATCGACGATTACGGCGGCCAGGTGGCCGTCGAATATACGTGTGACGCG
GGTGCTTGCAAGAGCGTGAAGCGATGA

Upstream 100 bases:

>100_bases
GCTTCAACTCGAAGGCACGCCGATTCCGGTGACGTGCCAGCCGCCCGGCGAGCCGCATGCAGCGGCCGCTCGGGTCGACC
GATGATTTCACGGATCCCGC

Downstream 100 bases:

>100_bases
GCGGCGCAGCGCGTGAACGGCACATGCCGGCGGCATGGTTGCGCTGGATCGTGCTCGCGTTGTTCGTTGTGGCGGCGCAG
CCCGCGTGGGCGTTGCGGTG

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MNPVFSLSFPRRAACMLTAASALLAGVAHAAIVPDRTRVIFNEGEPAAIVTITNKSTTYPYLVQSWLEDTRGNKITSPLM
VVPPLQRVEANERNVLRIAKLPGAALPADRESVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPM
TLRVDAAAHRLVFDNPTPYHVTVVDVTAGAQKTPVPIEPVMVDPMSTADVPFKAATPSTLFITHIDDYGGQVAVEYTCDA
GACKSVKR

Sequences:

>Translated_248_residues
MNPVFSLSFPRRAACMLTAASALLAGVAHAAIVPDRTRVIFNEGEPAAIVTITNKSTTYPYLVQSWLEDTRGNKITSPLM
VVPPLQRVEANERNVLRIAKLPGAALPADRESVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPM
TLRVDAAAHRLVFDNPTPYHVTVVDVTAGAQKTPVPIEPVMVDPMSTADVPFKAATPSTLFITHIDDYGGQVAVEYTCDA
GACKSVKR
>Mature_248_residues
MNPVFSLSFPRRAACMLTAASALLAGVAHAAIVPDRTRVIFNEGEPAAIVTITNKSTTYPYLVQSWLEDTRGNKITSPLM
VVPPLQRVEANERNVLRIAKLPGAALPADRESVFYLNIREVPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPM
TLRVDAAAHRLVFDNPTPYHVTVVDVTAGAQKTPVPIEPVMVDPMSTADVPFKAATPSTLFITHIDDYGGQVAVEYTCDA
GACKSVKR

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1788677, Length=216, Percent_Identity=40.2777777777778, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI87082203, Length=227, Percent_Identity=38.7665198237885, Blast_Score=164, Evalue=3e-42,
Organism=Escherichia coli, GI1786936, Length=220, Percent_Identity=32.7272727272727, Blast_Score=143, Evalue=1e-35,
Organism=Escherichia coli, GI1790771, Length=219, Percent_Identity=33.3333333333333, Blast_Score=120, Evalue=6e-29,
Organism=Escherichia coli, GI1789532, Length=230, Percent_Identity=32.1739130434783, Blast_Score=117, Evalue=9e-28,
Organism=Escherichia coli, GI1787171, Length=221, Percent_Identity=33.4841628959276, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1788428, Length=235, Percent_Identity=30.6382978723404, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1786333, Length=235, Percent_Identity=31.9148936170213, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1786743, Length=221, Percent_Identity=32.1266968325792, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87081806, Length=236, Percent_Identity=27.1186440677966, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27149; Mature: 27149

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVFSLSFPRRAACMLTAASALLAGVAHAAIVPDRTRVIFNEGEPAAIVTITNKSTTYP
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEEEEECCCCCCCH
YLVQSWLEDTRGNKITSPLMVVPPLQRVEANERNVLRIAKLPGAALPADRESVFYLNIRE
HHHHHHHHHHCCCCCCCCEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEE
VPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPMTLRVDAAAHRLVFDNPTPYH
CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEE
VTVVDVTAGAQKTPVPIEPVMVDPMSTADVPFKAATPSTLFITHIDDYGGQVAVEYTCDA
EEEEEEECCCCCCCCCCCCEEECCCCCCCCCEECCCCCEEEEEEECCCCCEEEEEEECCC
GACKSVKR
CCHHCCCC
>Mature Secondary Structure
MNPVFSLSFPRRAACMLTAASALLAGVAHAAIVPDRTRVIFNEGEPAAIVTITNKSTTYP
CCCEEECCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCCEEEEEECCCCCCCH
YLVQSWLEDTRGNKITSPLMVVPPLQRVEANERNVLRIAKLPGAALPADRESVFYLNIRE
HHHHHHHHHHCCCCCCCCEEEECCHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEE
VPPKTDTPNTLQIALHTQMKLFYRPKGVQPARDEDWTLPMTLRVDAAAHRLVFDNPTPYH
CCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCEE
VTVVDVTAGAQKTPVPIEPVMVDPMSTADVPFKAATPSTLFITHIDDYGGQVAVEYTCDA
EEEEEEECCCCCCCCCCCCEEECCCCCCCCCEECCCCCEEEEEEECCCCCEEEEEEECCC
GACKSVKR
CCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]