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The map label for this gene is yfcU [H]

Identifier: 115351577

GI number: 115351577

Start: 1675770

End: 1678256

Strand: Direct

Name: yfcU [H]

Synonym: Bamb_1524

Alternate gene names: 115351577

Gene position: 1675770-1678256 (Clockwise)

Preceding gene: 115351576

Following gene: 115351578

Centisome position: 47.12

GC content: 67.35

Gene sequence:

>2487_bases
GTGCGAATCAGACATTCCTTCCTTTGCGTCTCCGTGCTGGTCGTCGGCAGCCCGAGCCATGCGACGGAATTCAATTCGTC
GTTCCTCGACATCGACGGCACGAGCAATGTCGACCTGTCGCAGTTCTCGCAGCCCGACTTCACGCTGCCGGGCGAGTACA
TGCTCGACGTGCAGGTCAACGACCTGTTCTACGGGCTGCAGGCGATCCAGTTCATCGCGCTCGACGCATCCGGCGCGGGC
AAGCCGTGCCTGCCGCCGGAACTCGTCGCGCGGTTCGGGCTGAAACCGTCGCTCGCGAAGGACCTGCCGCGCTTGCAGGG
CGGCCGTTGCGTCGATCTCGGCGCGATCGAGGGCGCGACCGTGCGTTACCTGAAGAGCGACGGACGGCTGAAGATCACGG
TTCCGCAGGCCGCGCTCGAATTCACCGATTCGACCTACCTGCCGCCGTCGAGCTGGTCCGACGGGATTGCGGGCGCGATG
CTCGACTATCGCGTGATCGCGAACACGAACCGCAACTTCGGTTCGGGCGGCGGACAGACGAATTCGATCCAGGCGTACGG
AACGATCGGCGCGAACTGGGATGCATGGCGCTTTCGCGGCGACTACCAGGCGCAGTCGAACGTGGGCAACACGGCGTATG
CGGACCGCACGTTCCGCTTCAGCCGGCTTTACGCGTTTCGCGCGCTGCCGTCGATCCAGTCGACGGTGACGTTCGGCGAC
GACTACCTGAGCTCGGACATTTTCGACACGTTCGCGCTGACGGGGGCGTCGATCCGCAGCGACGATCGCATGCTGCCGCC
TTCGCTGCGCGGCTATGCGCCGCTGATCTCGGGCGTCGCGCGCACCAACGCGACCGTGACCGTGTCGCAGGTGGGCCGCG
TGCTGTACGTGACGCGCGTGTCGCCGGGCGCGTTCGCGCTGCAGAACATCAACACGAGCGTGCAGGGCACGCTCGACGTC
ACGGTCGATGAGGAAGACGGCAGCGTGCAGCGCTTCCAGGTGACGACGGCCGCCGTGCCGTTCCTCGCGCGTACCGGACA
GCTGCGCTACAAGGCTGCCGTCGGCAAGCCGCGGCAGTTCGGCGGCGCCGGCGTCACGCCGTTCTTCGGGTTCGGCGAAG
TCGCGTATGGGTTGCCGTTCGACGTCACGCTGTACGGCGGCTTCATCGCCGCGTCGGGCTATACGTCGATCGCACTGGGC
GTCGGCCGCGATTTCGGCACGTTCGGCGCGGTATCGGCCGATGTCACGCATGCGCGTGCGCACCTGTGGTGGAACGGCGC
GACGCGCAACGGCAACTCGTATCGCATCAATTATTCGAAGCACTTCGACGGGCTCGACGCGGACGTGCGCTTCTTCGGTT
ATCGCTTCTCCGAACGCGAGTACACCAACTTCGCGCAGTTCTCGGGCGACCCGACCGCGTACGGCCTCGCGAACAGCAAG
CAACGCTACTCGGCGACGATGTCGAAGCGCTTCGGCGACACGTCGACGTATTTCTCGTACGACCAGACGACCTACTGGGC
CCGCGCGTCGGAGCAGCGCGTCGGCCTCACGCTCACGCGCGCATTCTCGATCGGGGCATTGCGCAACCTGAACGTCAGCG
TGTCGGCGTTCCGCACGCAAAGCGCGGGCGCGAGCGGCAACCAGTTCTCGGTGACCGCGACGCTGCCGATCGGCGGCCGC
CACACCGTCACGTCGAACCTGACGACGGGCAGCGGCAGCACGAGCGCGAACGCGGGCTACATCTACGACGATCCGGCCGG
CCGCACGTACCAGATCAACGCGGGCGCCACCGACGGCCGCGCGTCGGCGAACGCGAGCTTCCGTCAGCGCACGTCGACTT
ACCAGTTGAGCGCGCAGGCGTCGACGCTCGCCAACGCGTATGCGGCCGCGTCGCTCGAAGTCGACGGCTCGCTCGTCGCG
ACGCAGTACGGCGTGTCCGCGCATGCGAACGGCAACGCGGGCGATACGCGGCTGCTGGTATCGACCGACGGCGTGCCCGA
CGTGCCGCTGTCCGGCACGCTCACGCATACCGACTCGCGCGGCTATGCGGTGCTCGACGGGATCTCGCCGTACAACGTGT
TCGACGCGACCGTCAACGTCGAGAAGCTGCCGCTCGAGGTGCAGGTGTCGAACCCGATCCAGCGCATGGTGCTGACCGAC
GGCGCGATCGGCTTCGTGAAGTTCTCCGCCGCGCGCGGCAGCAACCTGTATCTGACGCTGACCGATGCGGCCGGCAAGCC
GCTGCCGTTCGGCGCATCCGTGCAGGACGCGGCGAACGGCAAGGAGCTCGGCATCGTCGGCGAAGCCGGCGCCGCGTTCC
TGACCCAGGTGCAGCCGAAATCCGCGCTGGTGGTGCGGGCAGGCGAACGCACGCTGTGCGCGGTGAACGCACTGCCGAAC
CAGCTTCAACTCGAAGGCACGCCGATTCCGGTGACGTGCCAGCCGCCCGGCGAGCCGCATGCAGCGGCCGCTCGGGTCGA
CCGATGA

Upstream 100 bases:

>100_bases
CGCTACCAGTAAGCGCCGTATCGGAGAAGGGGTGTGCACACCCTTTCTCCGTCCTCCTTGCCTTCACGTCTCTACTTCCT
CGGATTTCCGGTAGCGCCGC

Downstream 100 bases:

>100_bases
TTTCACGGATCCCGCATGAACCCTGTTTTCTCTCTTTCCTTCCCGCGCCGCGCGGCGTGCATGCTGACCGCGGCCAGCGC
GCTGCTCGCAGGCGTCGCGC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 828; Mature: 828

Protein sequence:

>828_residues
MRIRHSFLCVSVLVVGSPSHATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVNDLFYGLQAIQFIALDASGAG
KPCLPPELVARFGLKPSLAKDLPRLQGGRCVDLGAIEGATVRYLKSDGRLKITVPQAALEFTDSTYLPPSSWSDGIAGAM
LDYRVIANTNRNFGSGGGQTNSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD
DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQVGRVLYVTRVSPGAFALQNINTSVQGTLDV
TVDEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRQFGGAGVTPFFGFGEVAYGLPFDVTLYGGFIAASGYTSIALG
VGRDFGTFGAVSADVTHARAHLWWNGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTAYGLANSK
QRYSATMSKRFGDTSTYFSYDQTTYWARASEQRVGLTLTRAFSIGALRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGR
HTVTSNLTTGSGSTSANAGYIYDDPAGRTYQINAGATDGRASANASFRQRTSTYQLSAQASTLANAYAAASLEVDGSLVA
TQYGVSAHANGNAGDTRLLVSTDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVFDATVNVEKLPLEVQVSNPIQRMVLTD
GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEAGAAFLTQVQPKSALVVRAGERTLCAVNALPN
QLQLEGTPIPVTCQPPGEPHAAAARVDR

Sequences:

>Translated_828_residues
MRIRHSFLCVSVLVVGSPSHATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVNDLFYGLQAIQFIALDASGAG
KPCLPPELVARFGLKPSLAKDLPRLQGGRCVDLGAIEGATVRYLKSDGRLKITVPQAALEFTDSTYLPPSSWSDGIAGAM
LDYRVIANTNRNFGSGGGQTNSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD
DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQVGRVLYVTRVSPGAFALQNINTSVQGTLDV
TVDEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRQFGGAGVTPFFGFGEVAYGLPFDVTLYGGFIAASGYTSIALG
VGRDFGTFGAVSADVTHARAHLWWNGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTAYGLANSK
QRYSATMSKRFGDTSTYFSYDQTTYWARASEQRVGLTLTRAFSIGALRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGR
HTVTSNLTTGSGSTSANAGYIYDDPAGRTYQINAGATDGRASANASFRQRTSTYQLSAQASTLANAYAAASLEVDGSLVA
TQYGVSAHANGNAGDTRLLVSTDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVFDATVNVEKLPLEVQVSNPIQRMVLTD
GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEAGAAFLTQVQPKSALVVRAGERTLCAVNALPN
QLQLEGTPIPVTCQPPGEPHAAAARVDR
>Mature_828_residues
MRIRHSFLCVSVLVVGSPSHATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVNDLFYGLQAIQFIALDASGAG
KPCLPPELVARFGLKPSLAKDLPRLQGGRCVDLGAIEGATVRYLKSDGRLKITVPQAALEFTDSTYLPPSSWSDGIAGAM
LDYRVIANTNRNFGSGGGQTNSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD
DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQVGRVLYVTRVSPGAFALQNINTSVQGTLDV
TVDEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRQFGGAGVTPFFGFGEVAYGLPFDVTLYGGFIAASGYTSIALG
VGRDFGTFGAVSADVTHARAHLWWNGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTAYGLANSK
QRYSATMSKRFGDTSTYFSYDQTTYWARASEQRVGLTLTRAFSIGALRNLNVSVSAFRTQSAGASGNQFSVTATLPIGGR
HTVTSNLTTGSGSTSANAGYIYDDPAGRTYQINAGATDGRASANASFRQRTSTYQLSAQASTLANAYAAASLEVDGSLVA
TQYGVSAHANGNAGDTRLLVSTDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVFDATVNVEKLPLEVQVSNPIQRMVLTD
GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEAGAAFLTQVQPKSALVVRAGERTLCAVNALPN
QLQLEGTPIPVTCQPPGEPHAAAARVDR

Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI87081778, Length=826, Percent_Identity=34.7457627118644, Blast_Score=437, Evalue=1e-123,
Organism=Escherichia coli, GI1786744, Length=876, Percent_Identity=29.9086757990868, Blast_Score=290, Evalue=2e-79,
Organism=Escherichia coli, GI1790772, Length=837, Percent_Identity=29.7491039426523, Blast_Score=270, Evalue=3e-73,
Organism=Escherichia coli, GI1787172, Length=861, Percent_Identity=26.945412311266, Blast_Score=259, Evalue=6e-70,
Organism=Escherichia coli, GI1786332, Length=821, Percent_Identity=27.8928136419001, Blast_Score=249, Evalue=6e-67,
Organism=Escherichia coli, GI1789533, Length=813, Percent_Identity=26.9372693726937, Blast_Score=224, Evalue=2e-59,
Organism=Escherichia coli, GI1788427, Length=837, Percent_Identity=26.284348864994, Blast_Score=202, Evalue=1e-52,
Organism=Escherichia coli, GI1789610, Length=786, Percent_Identity=23.6641221374046, Blast_Score=86, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 88164; Mature: 88164

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIRHSFLCVSVLVVGSPSHATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVN
CCCCHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEEEEH
DLFYGLQAIQFIALDASGAGKPCLPPELVARFGLKPSLAKDLPRLQGGRCVDLGAIEGAT
HHHHHHEEEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCE
VRYLKSDGRLKITVPQAALEFTDSTYLPPSSWSDGIAGAMLDYRVIANTNRNFGSGGGQT
EEEEECCCEEEEEECHHHEEECCCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCCCC
NSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD
CEEEEEEECCCCCCCEEEECCCCCCCCCCCCEECCCCEEHHHHHHHHHCCCCHHEEEECC
DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQVGRVLYVTRV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHCCEEEEEEEE
SPGAFALQNINTSVQGTLDVTVDEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRQF
CCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCEEEEEECCCCHHC
GGAGVTPFFGFGEVAYGLPFDVTLYGGFIAASGYTSIALGVGRDFGTFGAVSADVTHARA
CCCCCCCCCCCCHHHCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCCCEECCCEEEEE
HLWWNGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTAYGLANSK
EEEECCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCEECCCCCC
QRYSATMSKRFGDTSTYFSYDQTTYWARASEQRVGLTLTRAFSIGALRNLNVSVSAFRTQ
HHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCEEEEEEEECCCEECCCEEEEEEEEC
SAGASGNQFSVTATLPIGGRHTVTSNLTTGSGSTSANAGYIYDDPAGRTYQINAGATDGR
CCCCCCCEEEEEEEEECCCCEEEECCEECCCCCCCCCCCEEEECCCCCEEEEECCCCCCC
ASANASFRQRTSTYQLSAQASTLANAYAAASLEVDGSLVATQYGVSAHANGNAGDTRLLV
CCCCCHHHHCCCEEEEECHHHHHHHHHEEEEEEECCEEEEEEECCEECCCCCCCCEEEEE
STDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVFDATVNVEKLPLEVQVSNPIQRMVLTD
ECCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEEEECEEEEEECCCCEEEEEEC
GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEAGAAFLTQVQPK
CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEEECCCC
SALVVRAGERTLCAVNALPNQLQLEGTPIPVTCQPPGEPHAAAARVDR
CEEEEECCCCEEEEEECCCCEEEECCCCEEEEECCCCCCCHHHHCCCC
>Mature Secondary Structure
MRIRHSFLCVSVLVVGSPSHATEFNSSFLDIDGTSNVDLSQFSQPDFTLPGEYMLDVQVN
CCCCHHEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCCCCCEEEEEEEH
DLFYGLQAIQFIALDASGAGKPCLPPELVARFGLKPSLAKDLPRLQGGRCVDLGAIEGAT
HHHHHHEEEEEEEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCE
VRYLKSDGRLKITVPQAALEFTDSTYLPPSSWSDGIAGAMLDYRVIANTNRNFGSGGGQT
EEEEECCCEEEEEECHHHEEECCCCCCCCCCCCCCCHHHEEEEEEEECCCCCCCCCCCCC
NSIQAYGTIGANWDAWRFRGDYQAQSNVGNTAYADRTFRFSRLYAFRALPSIQSTVTFGD
CEEEEEEECCCCCCCEEEECCCCCCCCCCCCEECCCCEEHHHHHHHHHCCCCHHEEEECC
DYLSSDIFDTFALTGASIRSDDRMLPPSLRGYAPLISGVARTNATVTVSQVGRVLYVTRV
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEHHHCCEEEEEEEE
SPGAFALQNINTSVQGTLDVTVDEEDGSVQRFQVTTAAVPFLARTGQLRYKAAVGKPRQF
CCCCEEEECCCCCEEEEEEEEEECCCCCEEEEEEEHHHHHHHHCCCCEEEEEECCCCHHC
GGAGVTPFFGFGEVAYGLPFDVTLYGGFIAASGYTSIALGVGRDFGTFGAVSADVTHARA
CCCCCCCCCCCCHHHCCCCEEEEEECCEEEECCCCEEEEECCCCCCCCCCEECCCEEEEE
HLWWNGATRNGNSYRINYSKHFDGLDADVRFFGYRFSEREYTNFAQFSGDPTAYGLANSK
EEEECCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCEECCCCCC
QRYSATMSKRFGDTSTYFSYDQTTYWARASEQRVGLTLTRAFSIGALRNLNVSVSAFRTQ
HHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCCCEEEEEEEECCCEECCCEEEEEEEEC
SAGASGNQFSVTATLPIGGRHTVTSNLTTGSGSTSANAGYIYDDPAGRTYQINAGATDGR
CCCCCCCEEEEEEEEECCCCEEEECCEECCCCCCCCCCCEEEECCCCCEEEEECCCCCCC
ASANASFRQRTSTYQLSAQASTLANAYAAASLEVDGSLVATQYGVSAHANGNAGDTRLLV
CCCCCHHHHCCCEEEEECHHHHHHHHHEEEEEEECCEEEEEEECCEECCCCCCCCEEEEE
STDGVPDVPLSGTLTHTDSRGYAVLDGISPYNVFDATVNVEKLPLEVQVSNPIQRMVLTD
ECCCCCCCCCCCEEEECCCCCEEEEECCCCCEEEEEEEEEEECEEEEEECCCCEEEEEEC
GAIGFVKFSAARGSNLYLTLTDAAGKPLPFGASVQDAANGKELGIVGEAGAAFLTQVQPK
CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCEEEEEECCCCEEEEECCCC
SALVVRAGERTLCAVNALPNQLQLEGTPIPVTCQPPGEPHAAAARVDR
CEEEEECCCCEEEEEECCCCEEEECCCCEEEEECCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503 [H]