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The map label for this gene is rbsC [H]

Identifier: 115351558

GI number: 115351558

Start: 1649086

End: 1650105

Strand: Direct

Name: rbsC [H]

Synonym: Bamb_1505

Alternate gene names: 115351558

Gene position: 1649086-1650105 (Clockwise)

Preceding gene: 115351557

Following gene: 115351559

Centisome position: 46.37

GC content: 67.94

Gene sequence:

>1020_bases
ATGACCCAGCCTCCCGTATCCCCGAGCGACGCAGGCGCGCAGCAGGACGTGACGGAGCGCCGCGCGCGCACGCTGTCCGG
CACGCGGCTCGGCCTGTCGAACTATCTCGGGCTCGCCGGTGCGCTCGCCGCGATGATCGCGCTGTTTTCGGCGCTGAGCT
CGCATTTCCTGACCTACGATACGTTCAGTACGATCGCGAACCAGATCCCCGATCTCGTCGTGATGTCGGTCGGGATGACC
TTCGTGCTGATCATCGCCGGCATCGACCTGTCGGTTGGCTCGGTGCTCGCGCTGGCCGCGTCGATGGTCAGCGTGGCCGC
GCTGAAATGGCAGTGGGGGCCGCTGCCGGCCGCGCTGATCGGGATCGCGGTCGCGACCGCGACCGGCTCGCTGACCGGGG
CGATCACGGTGGGCTGGCGGATTCCGTCGTTCATCGTGTCGCTCGGCGTGCTCGAGGCCGCGCGCGGCGTCGCTTATCAG
CTGACGAATTCGCGCACGGCCTACATCGGCGACGCGTTCGATTTCCTGTCGAACCCGATCGCGCTCGGCATCTCGCCGGC
GTTCCTGATCGCGGTCGCGGTGATGATCGCGGCACAGTTCGTGCTCACGCGTACCGTGTTCGGGCGCTATCTCGTCGGGA
TCGGTACGAACGAGGAAGCCGTGCGGCTCGCCGGGGTTAACCCGCGGCCGTATAAAATCCTCGTATTCGCATTGATGGGC
GCGCTCGCCGGGCTCGCGTCGCTGTTCCAGATCTCGCGGCTCGAGGCCGCCGATCCGAACGCGGGCGCGGGCCTCGAACT
GCAGGTGATCGCGGCCGTCGTGATCGGCGGCACGAGCCTGATGGGCGGGCGCGGCTCGGTGATCAGCACGTTCTTCGGCG
TGTTGATCATCTCCGTGCTGGCCGCTGGGTTGGCGCAGATCGGCGCGAACGAGCCGACCAAACGGATCATCACCGGGGCG
GTGATCGTGGTGGCGGTCGTGCTCGATACGTATCGCAGCCGGCGCGCCCGCGCCCGGTAA

Upstream 100 bases:

>100_bases
CCGGCTTCGGCCGCGACGCGCTGCCGGAAGGCGCGCGCCACCTGGATGCGCAAGCGGCGCCGCGCGCGGCTTCCGGCACT
TCGACCACAGGACGACAGCA

Downstream 100 bases:

>100_bases
GAACTACACAGAAAGCAGACCAGAGAGAAACGGGAAATGGCGACGATCAAGGATGTGGCGGCCATGGCGGGCGTGTCGTT
TACGACCGTGTCGCACGTGG

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 338

Protein sequence:

>339_residues
MTQPPVSPSDAGAQQDVTERRARTLSGTRLGLSNYLGLAGALAAMIALFSALSSHFLTYDTFSTIANQIPDLVVMSVGMT
FVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATATGSLTGAITVGWRIPSFIVSLGVLEAARGVAYQ
LTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGA
VIVVAVVLDTYRSRRARAR

Sequences:

>Translated_339_residues
MTQPPVSPSDAGAQQDVTERRARTLSGTRLGLSNYLGLAGALAAMIALFSALSSHFLTYDTFSTIANQIPDLVVMSVGMT
FVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATATGSLTGAITVGWRIPSFIVSLGVLEAARGVAYQ
LTNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGA
VIVVAVVLDTYRSRRARAR
>Mature_338_residues
TQPPVSPSDAGAQQDVTERRARTLSGTRLGLSNYLGLAGALAAMIALFSALSSHFLTYDTFSTIANQIPDLVVMSVGMTF
VLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALIGIAVATATGSLTGAITVGWRIPSFIVSLGVLEAARGVAYQL
TNSRTAYIGDAFDFLSNPIALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMGA
LAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGANEPTKRIITGAV
IVVAVVLDTYRSRRARAR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=311, Percent_Identity=36.6559485530547, Blast_Score=166, Evalue=3e-42,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=32.0388349514563, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=32.6599326599327, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI145693152, Length=273, Percent_Identity=30.03663003663, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082395, Length=251, Percent_Identity=33.8645418326693, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=43.0656934306569, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693214, Length=251, Percent_Identity=32.2709163346614, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787793, Length=296, Percent_Identity=27.7027027027027, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788471, Length=288, Percent_Identity=30.2083333333333, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787794, Length=312, Percent_Identity=24.6794871794872, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34975; Mature: 34844

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPPVSPSDAGAQQDVTERRARTLSGTRLGLSNYLGLAGALAAMIALFSALSSHFLTYD
CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALI
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIAVATATGSLTGAITVGWRIPSFIVSLGVLEAARGVAYQLTNSRTAYIGDAFDFLSNPI
HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCC
ALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHH
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRARAR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQPPVSPSDAGAQQDVTERRARTLSGTRLGLSNYLGLAGALAAMIALFSALSSHFLTYD
CCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFSTIANQIPDLVVMSVGMTFVLIIAGIDLSVGSVLALAASMVSVAALKWQWGPLPAALI
HHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
GIAVATATGSLTGAITVGWRIPSFIVSLGVLEAARGVAYQLTNSRTAYIGDAFDFLSNPI
HHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCEEEECHHHHHHCCCC
ALGISPAFLIAVAVMIAAQFVLTRTVFGRYLVGIGTNEEAVRLAGVNPRPYKILVFALMG
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCCCHHHHHHHHHH
ALAGLASLFQISRLEAADPNAGAGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVL
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
AAGLAQIGANEPTKRIITGAVIVVAVVLDTYRSRRARAR
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]