Click here to switch to the map view.

The map label for this gene is selU [H]

Identifier: 115351541

GI number: 115351541

Start: 1632890

End: 1634017

Strand: Direct

Name: selU [H]

Synonym: Bamb_1488

Alternate gene names: 115351541

Gene position: 1632890-1634017 (Clockwise)

Preceding gene: 115351540

Following gene: 115351542

Centisome position: 45.91

GC content: 66.58

Gene sequence:

>1128_bases
TTGAAGAACCTGATTGTCACCCTCGATCGCGCTGGCGAGTTCGACGAGATCATCGACGTGCGTACGCCGCTCGAGTTCGC
CGAAGATCATATTCCCGGCGCGCTGAACGCACCCGTGCTCAGCAACGAGGAGCGCGTGATCGTCGGCACGATGTACCGTC
AGGTGTCGCCGTACGAAGCGACGCGCGTCGGCGCGGCGATGGTCGCACGCAACATCGCGCGCCATCTCGACACCACGTTC
GCCGACCGTCCGCGCAACTGGCGGCCGCTGATCTACTGCTGGCGCGGCGGCAAGCGCTCGGGCTCGATGACGACCTGGTT
CAACCTGATCGGCTGGCAAGCGCGGCAGCTCGACGGCGGCTACAAGTCATACCGCCGCTCGGTGTGCGCGACGCTCGACA
CGCTGCCCACGCGGTTCCGCTACATCGCGCTCGTCGGCCACACGGGCTGCGGCAAGACGCGGCTCCTGAACGCGCTGCGC
GACGAAGGGGCACAGACGCTCGACCTCGAGGCGCTCGCCTGCCACCGCGGCTCGCTGCTCGGCGCATTGCCGGGTGTGCC
GCAGCCCGCGCAGAAGTCGTTCGATTCGGGTCTCGTCGGCACGCTGGAGCGTTTCGACCCCGCATGGCCTGTCTTCGTCG
AATCGGAAAGCCGCAAGATTGGGCTCGTGCAGTTGCCGCTCGCGCTGATGGACGCGTTTCGCGCGGGGCCGTGGGTGCAG
GTCGAGGCCGAGCATGACGAACGCATCGCGTTCTTGCTCGAGGACTACGCCCACCTGTTCGACGAACCGGCCGCGTTCAA
GGCGCAATTGCATCGCCTGATCGGCCTCCACAGCCGGGAAGAGGTCGCGCGCTGGAACGCACTGATCGACGCGAACGCGC
GTGCCGAACTGTTCGGCACGCTGATCGACAAGCATTACGATCCTGCGTATGCACGCACCTATCGTTCGTCGTACGACAAA
TCGAACCGCGTGCTGACGTTCACGTTCCGGCCGAATGCGGCCGACGTGCGCCAGCAAGCGCGTGCGCTGCTCGACGCGCT
CGCGCGCGCCGGGCTTCCGGCGTCGCCCGTCGCCGGCAACGCAGCAGGATCCGACACCGACACAAACCAATCGACCACCA
CACGATGA

Upstream 100 bases:

>100_bases
GCCGCGCGCGGCCCGAGACGCCCGGGCATGAGATAATCGCGAATCCGCCTTCCGTGCCCGTGCGGCTCACCGAGCCGCAT
CGCCCCTGTTCGACGCCAAA

Downstream 100 bases:

>100_bases
CGACCACACGCACCCAACCCAATCCGGCGCTCGGCTGGATGACCTTCCTGCTGATCGCAGTCGCGGGACTGTTCTACGTG
AAATGGTTCCCGTACTACAA

Product: tRNA 2-selenouridine synthase

Products: NA

Alternate protein names: Selenophosphate-dependent tRNA 2-selenouridine synthase [H]

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MKNLIVTLDRAGEFDEIIDVRTPLEFAEDHIPGALNAPVLSNEERVIVGTMYRQVSPYEATRVGAAMVARNIARHLDTTF
ADRPRNWRPLIYCWRGGKRSGSMTTWFNLIGWQARQLDGGYKSYRRSVCATLDTLPTRFRYIALVGHTGCGKTRLLNALR
DEGAQTLDLEALACHRGSLLGALPGVPQPAQKSFDSGLVGTLERFDPAWPVFVESESRKIGLVQLPLALMDAFRAGPWVQ
VEAEHDERIAFLLEDYAHLFDEPAAFKAQLHRLIGLHSREEVARWNALIDANARAELFGTLIDKHYDPAYARTYRSSYDK
SNRVLTFTFRPNAADVRQQARALLDALARAGLPASPVAGNAAGSDTDTNQSTTTR

Sequences:

>Translated_375_residues
MKNLIVTLDRAGEFDEIIDVRTPLEFAEDHIPGALNAPVLSNEERVIVGTMYRQVSPYEATRVGAAMVARNIARHLDTTF
ADRPRNWRPLIYCWRGGKRSGSMTTWFNLIGWQARQLDGGYKSYRRSVCATLDTLPTRFRYIALVGHTGCGKTRLLNALR
DEGAQTLDLEALACHRGSLLGALPGVPQPAQKSFDSGLVGTLERFDPAWPVFVESESRKIGLVQLPLALMDAFRAGPWVQ
VEAEHDERIAFLLEDYAHLFDEPAAFKAQLHRLIGLHSREEVARWNALIDANARAELFGTLIDKHYDPAYARTYRSSYDK
SNRVLTFTFRPNAADVRQQARALLDALARAGLPASPVAGNAAGSDTDTNQSTTTR
>Mature_375_residues
MKNLIVTLDRAGEFDEIIDVRTPLEFAEDHIPGALNAPVLSNEERVIVGTMYRQVSPYEATRVGAAMVARNIARHLDTTF
ADRPRNWRPLIYCWRGGKRSGSMTTWFNLIGWQARQLDGGYKSYRRSVCATLDTLPTRFRYIALVGHTGCGKTRLLNALR
DEGAQTLDLEALACHRGSLLGALPGVPQPAQKSFDSGLVGTLERFDPAWPVFVESESRKIGLVQLPLALMDAFRAGPWVQ
VEAEHDERIAFLLEDYAHLFDEPAAFKAQLHRLIGLHSREEVARWNALIDANARAELFGTLIDKHYDPAYARTYRSSYDK
SNRVLTFTFRPNAADVRQQARALLDALARAGLPASPVAGNAAGSDTDTNQSTTTR

Specific function: Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA [H]

COG id: COG2603

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

Organism=Escherichia coli, GI1786712, Length=357, Percent_Identity=29.4117647058824, Blast_Score=117, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR017582 [H]

Pfam domain/function: PF00581 Rhodanese [H]

EC number: NA

Molecular weight: Translated: 41738; Mature: 41738

Theoretical pI: Translated: 8.01; Mature: 8.01

Prosite motif: PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLIVTLDRAGEFDEIIDVRTPLEFAEDHIPGALNAPVLSNEERVIVGTMYRQVSPYEA
CCCEEEEECCCCCHHHHHHCCCCHHHHHHCCCCCCCCCEECCCCEEEEEEHHHHCCCHHH
TRVGAAMVARNIARHLDTTFADRPRNWRPLIYCWRGGKRSGSMTTWFNLIGWQARQLDGG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCCH
YKSYRRSVCATLDTLPTRFRYIALVGHTGCGKTRLLNALRDEGAQTLDLEALACHRGSLL
HHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHHHCCCHH
GALPGVPQPAQKSFDSGLVGTLERFDPAWPVFVESESRKIGLVQLPLALMDAFRAGPWVQ
HCCCCCCCHHHHHHCCCCHHHHHHCCCCCCEEEECCCCEECEEEHHHHHHHHHCCCCEEE
VEAEHDERIAFLLEDYAHLFDEPAAFKAQLHRLIGLHSREEVARWNALIDANARAELFGT
EECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHH
LIDKHYDPAYARTYRSSYDKSNRVLTFTFRPNAADVRQQARALLDALARAGLPASPVAGN
HHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AAGSDTDTNQSTTTR
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNLIVTLDRAGEFDEIIDVRTPLEFAEDHIPGALNAPVLSNEERVIVGTMYRQVSPYEA
CCCEEEEECCCCCHHHHHHCCCCHHHHHHCCCCCCCCCEECCCCEEEEEEHHHHCCCHHH
TRVGAAMVARNIARHLDTTFADRPRNWRPLIYCWRGGKRSGSMTTWFNLIGWQARQLDGG
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCHHHHCCCH
YKSYRRSVCATLDTLPTRFRYIALVGHTGCGKTRLLNALRDEGAQTLDLEALACHRGSLL
HHHHHHHHHHHHHHHHHCEEEEEEEECCCCCHHHHHHHHHHCCCCEEEHHHHHHHCCCHH
GALPGVPQPAQKSFDSGLVGTLERFDPAWPVFVESESRKIGLVQLPLALMDAFRAGPWVQ
HCCCCCCCHHHHHHCCCCHHHHHHCCCCCCEEEECCCCEECEEEHHHHHHHHHCCCCEEE
VEAEHDERIAFLLEDYAHLFDEPAAFKAQLHRLIGLHSREEVARWNALIDANARAELFGT
EECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHH
LIDKHYDPAYARTYRSSYDKSNRVLTFTFRPNAADVRQQARALLDALARAGLPASPVAGN
HHHHCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
AAGSDTDTNQSTTTR
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12700255 [H]