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The map label for this gene is yybE [H]

Identifier: 115351540

GI number: 115351540

Start: 1631872

End: 1632825

Strand: Direct

Name: yybE [H]

Synonym: Bamb_1487

Alternate gene names: 115351540

Gene position: 1631872-1632825 (Clockwise)

Preceding gene: 115351537

Following gene: 115351541

Centisome position: 45.88

GC content: 70.44

Gene sequence:

>954_bases
ATGGCGGCTTTCCTGCATGGTCTTGCGCTGCGGTACTTCGTCGAAGTGGCGCGCACCGGGTCGATCAGCGACGCATCGGC
GCGGCTGCACGTGGCCGTCTCGGCGATCAGCCGGCAGATCGCGAAGCTCGAGAGCGAGCTTGGCGCGCCGCTGTTCGAGC
GGCGGCCGCGCGGGATGACGCTGTCGGAGGCCGGCGAACGGCTGCTGGGCTTCGCGCAGCGCAGCCTGCTGGAGGCCGAG
CACGTGATGAAGGAAATCGGCGGGCTGGAAGCGCTGCACGGCAGCCTGCTGAAGATCGTCTGCTCGGAAGGGTTCGCGAT
CGATTTCCTGCCGGGCGCGCTCGCGGGCTTCAAGGCGCGCCACCCGGGCGTCGATTTCTCGGTGTGGGTCGTGTCGCCGG
CGGAGGCGACGCGGCGCGTGCGCGACGGCGACGCCGACATCGGTCTGACGTTCAGCCTGGCGCCGGAGCAGGGCGTGCGC
GTGGAACACACGGAGCGTGCGCCGGTCTTCGCGCTCGTGCGGCACGACCATCCGCTCGCGGCGCGCGACTCCGTGTCGCT
CGCCGACGTCGTGCGGCACCCGCATGTGCTGCCGGAGGCCGGCACGACGGTGCGCCAGCTGATCGACATGGCGTGCGTGC
TCGACGGGCTCATGCTCGAGCCGGAACTGACCAGCAACAACACCGCCGTGATGTACCGCTATGCGCAGCGTACCGGTGCG
GTGATGTTCACGGGGCTGCTGTCGGTACGCGACCGCTTCGACTCGGACGGCTTCGTCGTCGTGCCCGTCACGAACCCGCA
GCTGCACGAGCGCAGCATCCAGGTACAGACCATGGCGGGGCGCGAGCTGCCCGCGTCGGTACGCGCGTTTCGCGACCATC
TGGTCGACGTGATGAGCGCCGCGTCGCCCCCGCCCGTTGCCGCGCGCGGCCCGAGACGCCCGGGCATGAGATAA

Upstream 100 bases:

>100_bases
TCTAGGAAGCCGTTTTTTTTGTCACAATGATCGAATTTCGAACATTTCGTTGCCGAAAAGGCAAAGCAAAACAGCCCGGC
CGACGGGTCCGGAGAGAACG

Downstream 100 bases:

>100_bases
TCGCGAATCCGCCTTCCGTGCCCGTGCGGCTCACCGAGCCGCATCGCCCCTGTTCGACGCCAAATTGAAGAACCTGATTG
TCACCCTCGATCGCGCTGGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 316

Protein sequence:

>317_residues
MAAFLHGLALRYFVEVARTGSISDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMTLSEAGERLLGFAQRSLLEAE
HVMKEIGGLEALHGSLLKIVCSEGFAIDFLPGALAGFKARHPGVDFSVWVVSPAEATRRVRDGDADIGLTFSLAPEQGVR
VEHTERAPVFALVRHDHPLAARDSVSLADVVRHPHVLPEAGTTVRQLIDMACVLDGLMLEPELTSNNTAVMYRYAQRTGA
VMFTGLLSVRDRFDSDGFVVVPVTNPQLHERSIQVQTMAGRELPASVRAFRDHLVDVMSAASPPPVAARGPRRPGMR

Sequences:

>Translated_317_residues
MAAFLHGLALRYFVEVARTGSISDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMTLSEAGERLLGFAQRSLLEAE
HVMKEIGGLEALHGSLLKIVCSEGFAIDFLPGALAGFKARHPGVDFSVWVVSPAEATRRVRDGDADIGLTFSLAPEQGVR
VEHTERAPVFALVRHDHPLAARDSVSLADVVRHPHVLPEAGTTVRQLIDMACVLDGLMLEPELTSNNTAVMYRYAQRTGA
VMFTGLLSVRDRFDSDGFVVVPVTNPQLHERSIQVQTMAGRELPASVRAFRDHLVDVMSAASPPPVAARGPRRPGMR
>Mature_316_residues
AAFLHGLALRYFVEVARTGSISDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMTLSEAGERLLGFAQRSLLEAEH
VMKEIGGLEALHGSLLKIVCSEGFAIDFLPGALAGFKARHPGVDFSVWVVSPAEATRRVRDGDADIGLTFSLAPEQGVRV
EHTERAPVFALVRHDHPLAARDSVSLADVVRHPHVLPEAGTTVRQLIDMACVLDGLMLEPELTSNNTAVMYRYAQRTGAV
MFTGLLSVRDRFDSDGFVVVPVTNPQLHERSIQVQTMAGRELPASVRAFRDHLVDVMSAASPPPVAARGPRRPGMR

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=286, Percent_Identity=28.3216783216783, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI145693105, Length=201, Percent_Identity=24.8756218905473, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788748, Length=208, Percent_Identity=26.4423076923077, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=143, Percent_Identity=35.6643356643357, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788296, Length=232, Percent_Identity=28.8793103448276, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787530, Length=236, Percent_Identity=28.3898305084746, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787879, Length=292, Percent_Identity=25.3424657534247, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081904, Length=202, Percent_Identity=28.2178217821782, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=205, Percent_Identity=27.3170731707317, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=183, Percent_Identity=27.8688524590164, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788297, Length=212, Percent_Identity=25.9433962264151, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789204, Length=205, Percent_Identity=26.8292682926829, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789173, Length=159, Percent_Identity=33.9622641509434, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34418; Mature: 34287

Theoretical pI: Translated: 7.45; Mature: 7.45

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAFLHGLALRYFVEVARTGSISDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMT
CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
LSEAGERLLGFAQRSLLEAEHVMKEIGGLEALHGSLLKIVCSEGFAIDFLPGALAGFKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCHHHHCCCCC
HPGVDFSVWVVSPAEATRRVRDGDADIGLTFSLAPEQGVRVEHTERAPVFALVRHDHPLA
CCCCCEEEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCCCEEEEEECCCCCC
ARDSVSLADVVRHPHVLPEAGTTVRQLIDMACVLDGLMLEPELTSNNTAVMYRYAQRTGA
CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEHHHCCH
VMFTGLLSVRDRFDSDGFVVVPVTNPQLHERSIQVQTMAGRELPASVRAFRDHLVDVMSA
HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHC
ASPPPVAARGPRRPGMR
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AAFLHGLALRYFVEVARTGSISDASARLHVAVSAISRQIAKLESELGAPLFERRPRGMT
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC
LSEAGERLLGFAQRSLLEAEHVMKEIGGLEALHGSLLKIVCSEGFAIDFLPGALAGFKAR
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEECCCHHHHCCCCC
HPGVDFSVWVVSPAEATRRVRDGDADIGLTFSLAPEQGVRVEHTERAPVFALVRHDHPLA
CCCCCEEEEEECHHHHHHHHCCCCCCEEEEEEECCCCCCEEEECCCCCEEEEEECCCCCC
ARDSVSLADVVRHPHVLPEAGTTVRQLIDMACVLDGLMLEPELTSNNTAVMYRYAQRTGA
CCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCEECCCCCCCCCEEEEEEHHHCCH
VMFTGLLSVRDRFDSDGFVVVPVTNPQLHERSIQVQTMAGRELPASVRAFRDHLVDVMSA
HHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEEEEEEECCCCCCHHHHHHHHHHHHHHHC
ASPPPVAARGPRRPGMR
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]