| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is tas [H]
Identifier: 115351537
GI number: 115351537
Start: 1627830
End: 1628882
Strand: Direct
Name: tas [H]
Synonym: Bamb_1484
Alternate gene names: 115351537
Gene position: 1627830-1628882 (Clockwise)
Preceding gene: 115351536
Following gene: 115351540
Centisome position: 45.77
GC content: 66.38
Gene sequence:
>1053_bases ATGGAATACCGCACACTCGGCGATTCGGGCATCGAGGTCAGCCTGATCGGTCTTGGCACGATGACGTGGGGCGAGCAGAA TTCGGAGCGCGACGCCCACGAGCAGATCGATTACGCGCTCGGGCAGGGCGTCACGTTGATCGACGCCGCGGAGATGTACC CGGTGCCTCCGAAGCCTGAAACTCAGGGGCGCACGGAGCAGTACATCGGCACCTGGCTCGCGCAGCATCGTGCGCAACGC GACCGGATCGTGCTCGCGACCAAGATCGCGGGCCCGGCGCGGCAGCCGCACAATCCGCGCCACATTCGCGGCGAAGGTAA CCAGTTCGACCGCAAGAACCTGACCGAGGCGCTCGACGGCAGCCTCAAGCGCCTGCAGACCGACTATGTCGACCTGTACC AGTTGCACTGGCCCGATCGCAGCACGACGACGTTTGGTCGCCCCGCGTATCCGTGGGTCGACGATGCGTATACGGTGCCG ATCGAGGAAACGCTGGGCGTGCTCGCGGAATTCGTGAAGGCCGGCAAGGTCCGCGCGATCGGCGTGTCGAATGAAACGCC GTGGGGCGTCGCGCAATTCCTGCGCGCGGCCGAGAAGCTCGGGCTGCCGCGCATCGCGAGCATTCAGAACCCGTACAGCC TGCTGAACCGCACGTTCGAGAACGGCCTGTCCGAGTTCACGCATCGCGATGGCGTCGGCCTGCTCGCCTATTCGCCGCTC GCATTCGGCTGGCTGTCCGGCAAGTACGAGAACGGCGCGCGTCCGGCCGGCGCGCGCATCACGCTGTTCGAGCGCTTCCA GCGCTACAGCAAGCCTCACGCGGTCGAAGCGACGTCGCGCTATGTCGCGCTCGCGAAGCGCCACGGGCTGTCGCCCGCGC AGCTTGCGCTCGCGTTCGTCAACAGCCGGCCGTTCGTCCGCAGCAACCTCGTCGGCGCGACGTCGCTCGACCAGTTGAAG GAGAACATCGGCAGCATCGACGTGAAGCTGTCCGACGAGATCCTGGCCGAGATCGACGCGCTGCACGAACTGCAGCCGAA CCCGGCGCCGTAA
Upstream 100 bases:
>100_bases CACACACCGAAGGCGGCCTGTAAGCATGCGGCCCGGCCATCTGAAGCATTCGGTTCAATGTGATAGCGTTTCTGCTTTCC ACTGACGTGACAGGAACAGC
Downstream 100 bases:
>100_bases ACGGCGAGCGGCCCGCGCGGCAGGGTTGCCGCGACGGGCCGCGTCCGACGCGCATCATTGCGCGGTCGTTTCCTTTGCGC GAGGTCAGCGCATCCCGAGC
Product: aldo/keto reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 350; Mature: 350
Protein sequence:
>350_residues MEYRTLGDSGIEVSLIGLGTMTWGEQNSERDAHEQIDYALGQGVTLIDAAEMYPVPPKPETQGRTEQYIGTWLAQHRAQR DRIVLATKIAGPARQPHNPRHIRGEGNQFDRKNLTEALDGSLKRLQTDYVDLYQLHWPDRSTTTFGRPAYPWVDDAYTVP IEETLGVLAEFVKAGKVRAIGVSNETPWGVAQFLRAAEKLGLPRIASIQNPYSLLNRTFENGLSEFTHRDGVGLLAYSPL AFGWLSGKYENGARPAGARITLFERFQRYSKPHAVEATSRYVALAKRHGLSPAQLALAFVNSRPFVRSNLVGATSLDQLK ENIGSIDVKLSDEILAEIDALHELQPNPAP
Sequences:
>Translated_350_residues MEYRTLGDSGIEVSLIGLGTMTWGEQNSERDAHEQIDYALGQGVTLIDAAEMYPVPPKPETQGRTEQYIGTWLAQHRAQR DRIVLATKIAGPARQPHNPRHIRGEGNQFDRKNLTEALDGSLKRLQTDYVDLYQLHWPDRSTTTFGRPAYPWVDDAYTVP IEETLGVLAEFVKAGKVRAIGVSNETPWGVAQFLRAAEKLGLPRIASIQNPYSLLNRTFENGLSEFTHRDGVGLLAYSPL AFGWLSGKYENGARPAGARITLFERFQRYSKPHAVEATSRYVALAKRHGLSPAQLALAFVNSRPFVRSNLVGATSLDQLK ENIGSIDVKLSDEILAEIDALHELQPNPAP >Mature_350_residues MEYRTLGDSGIEVSLIGLGTMTWGEQNSERDAHEQIDYALGQGVTLIDAAEMYPVPPKPETQGRTEQYIGTWLAQHRAQR DRIVLATKIAGPARQPHNPRHIRGEGNQFDRKNLTEALDGSLKRLQTDYVDLYQLHWPDRSTTTFGRPAYPWVDDAYTVP IEETLGVLAEFVKAGKVRAIGVSNETPWGVAQFLRAAEKLGLPRIASIQNPYSLLNRTFENGLSEFTHRDGVGLLAYSPL AFGWLSGKYENGARPAGARITLFERFQRYSKPHAVEATSRYVALAKRHGLSPAQLALAFVNSRPFVRSNLVGATSLDQLK ENIGSIDVKLSDEILAEIDALHELQPNPAP
Specific function: Unknown
COG id: COG0667
COG function: function code C; Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldo/keto reductase 2 family [H]
Homologues:
Organism=Homo sapiens, GI27436969, Length=360, Percent_Identity=31.9444444444444, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI4504825, Length=355, Percent_Identity=31.830985915493, Blast_Score=135, Evalue=5e-32, Organism=Homo sapiens, GI27436964, Length=360, Percent_Identity=30.8333333333333, Blast_Score=134, Evalue=1e-31, Organism=Homo sapiens, GI27436962, Length=360, Percent_Identity=30.8333333333333, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI27436966, Length=360, Percent_Identity=30.5555555555556, Blast_Score=130, Evalue=1e-30, Organism=Homo sapiens, GI27436971, Length=362, Percent_Identity=30.3867403314917, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI41152114, Length=238, Percent_Identity=29.8319327731092, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI41327764, Length=336, Percent_Identity=26.7857142857143, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI223718702, Length=326, Percent_Identity=26.9938650306748, Blast_Score=77, Evalue=2e-14, Organism=Escherichia coli, GI1789199, Length=350, Percent_Identity=58.2857142857143, Blast_Score=421, Evalue=1e-119, Organism=Escherichia coli, GI87081735, Length=356, Percent_Identity=28.9325842696629, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788070, Length=343, Percent_Identity=30.0291545189504, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1789375, Length=348, Percent_Identity=31.6091954022989, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1788081, Length=356, Percent_Identity=27.8089887640449, Blast_Score=81, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6325169, Length=355, Percent_Identity=26.1971830985915, Blast_Score=100, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6323998, Length=352, Percent_Identity=27.5568181818182, Blast_Score=94, Evalue=3e-20, Organism=Saccharomyces cerevisiae, GI6319958, Length=329, Percent_Identity=27.355623100304, Blast_Score=92, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6319951, Length=337, Percent_Identity=25.8160237388724, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6322615, Length=269, Percent_Identity=25.6505576208178, Blast_Score=80, Evalue=7e-16, Organism=Saccharomyces cerevisiae, GI6324694, Length=248, Percent_Identity=30.6451612903226, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6320079, Length=235, Percent_Identity=30.2127659574468, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6320576, Length=311, Percent_Identity=26.3665594855305, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24646159, Length=254, Percent_Identity=31.8897637795276, Blast_Score=81, Evalue=1e-15, Organism=Drosophila melanogaster, GI24646155, Length=357, Percent_Identity=28.0112044817927, Blast_Score=73, Evalue=4e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001395 - InterPro: IPR020471 - InterPro: IPR023210 [H]
Pfam domain/function: PF00248 Aldo_ket_red [H]
EC number: NA
Molecular weight: Translated: 38870; Mature: 38870
Theoretical pI: Translated: 6.81; Mature: 6.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEYRTLGDSGIEVSLIGLGTMTWGEQNSERDAHEQIDYALGQGVTLIDAAEMYPVPPKPE CCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCC TQGRTEQYIGTWLAQHRAQRDRIVLATKIAGPARQPHNPRHIRGEGNQFDRKNLTEALDG CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH SLKRLQTDYVDLYQLHWPDRSTTTFGRPAYPWVDDAYTVPIEETLGVLAEFVKAGKVRAI HHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEE GVSNETPWGVAQFLRAAEKLGLPRIASIQNPYSLLNRTFENGLSEFTHRDGVGLLAYSPL ECCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCH AFGWLSGKYENGARPAGARITLFERFQRYSKPHAVEATSRYVALAKRHGLSPAQLALAFV HHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH NSRPFVRSNLVGATSLDQLKENIGSIDVKLSDEILAEIDALHELQPNPAP CCCCCHHHCCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MEYRTLGDSGIEVSLIGLGTMTWGEQNSERDAHEQIDYALGQGVTLIDAAEMYPVPPKPE CCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCC TQGRTEQYIGTWLAQHRAQRDRIVLATKIAGPARQPHNPRHIRGEGNQFDRKNLTEALDG CCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH SLKRLQTDYVDLYQLHWPDRSTTTFGRPAYPWVDDAYTVPIEETLGVLAEFVKAGKVRAI HHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHCCCEEEE GVSNETPWGVAQFLRAAEKLGLPRIASIQNPYSLLNRTFENGLSEFTHRDGVGLLAYSPL ECCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCH AFGWLSGKYENGARPAGARITLFERFQRYSKPHAVEATSRYVALAKRHGLSPAQLALAFV HHHHHCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH NSRPFVRSNLVGATSLDQLKENIGSIDVKLSDEILAEIDALHELQPNPAP CCCCCHHHCCCCCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9560382; 9278503 [H]