Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351512

Identifier: 115351512

GI number: 115351512

Start: 1608841

End: 1609338

Strand: Direct

Name: 115351512

Synonym: Bamb_1459

Alternate gene names: NA

Gene position: 1608841-1609338 (Clockwise)

Preceding gene: 115351505

Following gene: 115351513

Centisome position: 45.24

GC content: 69.68

Gene sequence:

>498_bases
ATGGACATCGCTCACGATCTGCAATCGATCGGCGCGCAGGAACAGGCGCTCGTGTTTCCCCATTTCGACCCGGCCCGCGC
GTGGGCGCTCGGCAACCGCATGCATGCGCTCGCGACGGCGCGCGGTCACGCGATCGCAATCGACATCGTCACGTTCGGCC
AGCCGCTGTTCTACGCGGCGCTCGCCGGCGCGACGCCCGACAACGCCGACTGGGTGCGCCGCAAGCGTAACGTCGTCGCG
CATTTTCGCCGCAGTTCGTATGCGATCGGCCTGCGCATGCAGCAGGCCGGCGCGTCGCTCGCGGACAAGCACGGGCTGCC
CATCTCCGACTATTCGCCGCACGGCGGTTCGTTTCCGCTGACCGTCGCGGGGGCCGGCGTGATCGGCTCGATCACCGCGT
CGGGGCTGCCGCAGCGCGCGGATCACGAGTTCGTCGTCGAAGCGCTGTGCGCCGAGCTCGGGCAGGACTACGCCGCGCTG
GCGCTTGCGAGGAGCTGA

Upstream 100 bases:

>100_bases
GGTTTGCTCGTGTCGTTCATTCCTGCAGCGAAGCCGTGCGCGATCGCGTCGGTGCCGTTGCAACGCTCACTACTGTTGTT
ACTACTGCCTCGACGGATTC

Downstream 100 bases:

>100_bases
GCGATGCAGCTTCCGGGTTACGCATGGCTCGCGATCGCGATCGTCGCGGAAGTGGTCGGCACGTCCGCGCTGCGCGCGGC
GGACGGCTTCACGCGCTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAALAGATPDNADWVRRKRNVVA
HFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPLTVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAAL
ALARS

Sequences:

>Translated_165_residues
MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAALAGATPDNADWVRRKRNVVA
HFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPLTVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAAL
ALARS
>Mature_165_residues
MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAALAGATPDNADWVRRKRNVVA
HFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPLTVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAAL
ALARS

Specific function: Unknown

COG id: COG4702

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0303 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005624
- InterPro:   IPR010371 [H]

Pfam domain/function: PF03928 DUF336 [H]

EC number: NA

Molecular weight: Translated: 17497; Mature: 17497

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAA
CCHHHHHHHCCCCCCEEEECCCCHHHHHHHCCHHHHHHHCCCCEEEEEEEECCCHHHHHH
LAGATPDNADWVRRKRNVVAHFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPL
HHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCHHHHCCCCCCCCCCCCCCCCE
TVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAALALARS
EEECCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHEECC
>Mature Secondary Structure
MDIAHDLQSIGAQEQALVFPHFDPARAWALGNRMHALATARGHAIAIDIVTFGQPLFYAA
CCHHHHHHHCCCCCCEEEECCCCHHHHHHHCCHHHHHHHCCCCEEEEEEEECCCHHHHHH
LAGATPDNADWVRRKRNVVAHFRRSSYAIGLRMQQAGASLADKHGLPISDYSPHGGSFPL
HHCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEHHHCCCHHHHCCCCCCCCCCCCCCCCE
TVAGAGVIGSITASGLPQRADHEFVVEALCAELGQDYAALALARS
EEECCCEEEHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA