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The map label for this gene is hofQ [C]

Identifier: 115351456

GI number: 115351456

Start: 1545863

End: 1547197

Strand: Direct

Name: hofQ [C]

Synonym: Bamb_1403

Alternate gene names: 115351456

Gene position: 1545863-1547197 (Clockwise)

Preceding gene: 115351455

Following gene: 115351457

Centisome position: 43.47

GC content: 64.49

Gene sequence:

>1335_bases
ATGACAAACAAACTGATTGCATACGCGATTGCTATCTGGGCCATGACCTTTGGTGTCCTGACGGAGGCTGCCGGTACAAA
CGCGTCGATTGACCTTGCGGTCGGCTCGCAACGACAGGTCGCTGCCGGCCGCACGCTGCAACGGATCGCGGTTGGCGATC
CCGCCGTCGTCGACGTGCTGGTCATGAAGGGGAGCCATGCCGGATCGGTACTGCTGGTTGCGAAGGCACCGGGTTCGACG
AACGTGTTGTTGTGGGAGCGGGGCCGCGACGAGCCGACGGTGTGGAACGTCAATGTCGTCGATGCGGCCGCTCAGGCGGC
ACTGGATGGTTCGGCGCCGAAGGTCAAGGGATACGGCGGAGCCGCGGTCCTGTCCGGCTCCTCCGCGTCGCTCGACGCGC
ATGAACGGGCCGTGGCCGTCGGCAAGCGGATGGGTGGCAAGGACGGCACGGTAATCGATGCGTCGACGGTCGGTAACCGG
AGCGTCGTGCAGGTCGACGTGCGCGTCGTCGAATTCAGCCGCTCGGTGCTGAAGGAAGCGGGGCTGAACTTCTTCAAGCA
GAGCAACGGATTCGCGTTCGGTGCGTTTTCGCCGGGCGGTCTTCAGTCCGTGACGGGCGGCGCGACGTCGGCCTTCGCGG
CGACGGGCGGCATTCCGATTGCGTCGGCGTTCAACCTGGTCGTGAATTCCGCCGGCCGCGGCATTTTCGGCAATATTTCG
ATTCTCGAAGCGAACAACCTGGCCCGCGTGCTTGCGCAGCCGACGCTGGTAGCGCTGTCGGGCCAGAGCGCGAGTTTTCT
CGCAGGCGGCGAAATTCCGGTACCGGTGCCGCAGGCACTGGGCTCGACAGCGATCGACTGGAAGCAGTACGGCGTTGGTC
TCACGCTGACGCCGACCGTGCTGAGCCAGCACCGGATCGCGCTCAAGGTCGCGCCCGAATCGAGTCAGCTCGACTTTCAG
CACGGCGTGACGATCAACAGCGTGTCGGTGCCGGCCATCACGACCCGGCGCGCGGATACGACGGTCGAACTGGGCGATGG
CGAGAGCTTCGTGATTGGCGGCCTGATCGACCGCGAAACGATGTCGAACATCAGCAAGGTGCCGGTCCTGGGCGATCTGC
CGATCATCGGTGCGTTCTTCAAATCGTTGAATTACCAGCAGAACGACAAGGAGCTGGTGATCATCGTGACACCGCATCTG
GTGGCGCCGATCGCGAAGGGCGCACCGCTGCCGGCGACGCCGGGTGAGCTGTCCGAGCAGCGCGACGGGCCTGTCTGGCG
CTCGTATCTTGGCGGTATCGCGTCGCCGGATGCCGCGCCGGGATTTTCGAAATGA

Upstream 100 bases:

>100_bases
ATTCGTGGCGGGCGTGCCGAAACGGTTGCCTATTGACATCAACGTACGATCATCGACAGCAGCTACGGAACAGAGAAGGC
CGCGCGACGGCCCCGACACA

Downstream 100 bases:

>100_bases
CCGCACGGCGCGGCATCGCGCGATACGGATTCGGGGGTATTCAACATGAACGCGAGAACCCTTTCATTGGCTGAGCCCGC
CGTGACTGATTATTTTGTAT

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 444; Mature: 443

Protein sequence:

>444_residues
MTNKLIAYAIAIWAMTFGVLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGST
NVLLWERGRDEPTVWNVNVVDAAAQAALDGSAPKVKGYGGAAVLSGSSASLDAHERAVAVGKRMGGKDGTVIDASTVGNR
SVVQVDVRVVEFSRSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNIS
ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQALGSTAIDWKQYGVGLTLTPTVLSQHRIALKVAPESSQLDFQ
HGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHL
VAPIAKGAPLPATPGELSEQRDGPVWRSYLGGIASPDAAPGFSK

Sequences:

>Translated_444_residues
MTNKLIAYAIAIWAMTFGVLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGST
NVLLWERGRDEPTVWNVNVVDAAAQAALDGSAPKVKGYGGAAVLSGSSASLDAHERAVAVGKRMGGKDGTVIDASTVGNR
SVVQVDVRVVEFSRSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNIS
ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQALGSTAIDWKQYGVGLTLTPTVLSQHRIALKVAPESSQLDFQ
HGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHL
VAPIAKGAPLPATPGELSEQRDGPVWRSYLGGIASPDAAPGFSK
>Mature_443_residues
TNKLIAYAIAIWAMTFGVLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPGSTN
VLLWERGRDEPTVWNVNVVDAAAQAALDGSAPKVKGYGGAAVLSGSSASLDAHERAVAVGKRMGGKDGTVIDASTVGNRS
VVQVDVRVVEFSRSVLKEAGLNFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISI
LEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQALGSTAIDWKQYGVGLTLTPTVLSQHRIALKVAPESSQLDFQH
GVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETMSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLV
APIAKGAPLPATPGELSEQRDGPVWRSYLGGIASPDAAPGFSK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=242, Percent_Identity=30.5785123966942, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082242, Length=168, Percent_Identity=29.1666666666667, Blast_Score=78, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 45597; Mature: 45466

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKLIAYAIAIWAMTFGVLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVL
CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCEEEEECCCCCEEEEE
VMKGSHAGSVLLVAKAPGSTNVLLWERGRDEPTVWNVNVVDAAAQAALDGSAPKVKGYGG
EECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHCCCCCCEEECCCC
AAVLSGSSASLDAHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVVEFSRSVLKEA
EEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEEEHHHHHHHHHH
GLNFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNIS
CCHHEECCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEE
ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQALGSTAIDWKQYGVGLTLTPTV
EEECCCHHHHHCCCEEEEEECCCCEEEECCCCCCCCHHHCCCCEECHHHHCCCEEECHHH
LSQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRET
HCCCEEEEEECCCCCCCCHHCCEEEECEECCEEEECCCCCEEEECCCCEEEEECEECHHH
MSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGAPLPATPGELSEQ
HHHHHCCCEECCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCHHC
RDGPVWRSYLGGIASPDAAPGFSK
CCCCHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TNKLIAYAIAIWAMTFGVLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVL
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCEEEEECCCCCEEEEE
VMKGSHAGSVLLVAKAPGSTNVLLWERGRDEPTVWNVNVVDAAAQAALDGSAPKVKGYGG
EECCCCCCCEEEEEECCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHCCCCCCEEECCCC
AAVLSGSSASLDAHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVVEFSRSVLKEA
EEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEEEHHHHHHHHHH
GLNFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNIS
CCHHEECCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCCEEEEEE
ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVPVPQALGSTAIDWKQYGVGLTLTPTV
EEECCCHHHHHCCCEEEEEECCCCEEEECCCCCCCCHHHCCCCEECHHHHCCCEEECHHH
LSQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRET
HCCCEEEEEECCCCCCCCHHCCEEEECEECCEEEECCCCCEEEECCCCEEEEECEECHHH
MSNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGAPLPATPGELSEQ
HHHHHCCCEECCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHCCCCCCCCCCCCHHC
RDGPVWRSYLGGIASPDAAPGFSK
CCCCHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]