Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115351455

Identifier: 115351455

GI number: 115351455

Start: 1544893

End: 1545798

Strand: Direct

Name: 115351455

Synonym: Bamb_1402

Alternate gene names: NA

Gene position: 1544893-1545798 (Clockwise)

Preceding gene: 115351454

Following gene: 115351456

Centisome position: 43.44

GC content: 69.76

Gene sequence:

>906_bases
ATGGCCAACAACTTGACGAAGATCATCGCCGGGCTGCTGATCGCAATCGCAGTCCTGCTCGGGATCTATGCATGGACGCT
TGGCCGCGCGCCGGCTCATCCGCCGGTTGTGGCAACGCCGACCGTCGCGGCGCAATCGGTGCCGCTCGTCGTGGCCGCGC
GCGTGCTGCCGGCCGGCCAGCCGATTCCCGCCGATGCATTGAAGCTGGCACAGGTGCCGATGATGCCGACTGGCGGGTTC
AGCGATCCGACGGCCCTTGTCGGTCGCGTGCCGGCGAACGACATTCTTGCCGCAGCGCCGGTGCTCGAAGGCGCGTTGAC
CTCCGGACTGGCCGACCAGGTGGCGCTTGGTGAGCGTGCCGTCGCCGTGAAGGTCGACGAATCGAACGCGGTCGGCAACC
GGCTGCGGCCCGGCAACTTTGTCGACGTGTTCCTGAATCTGCGGCGTGACGGATCCGGCGGCGCCCAAGTGAATTCGGAG
ATTCCCGCTACGCAGGCGCGCCTGCTGCTGTCGAGGGTCCGTGTGCTGTCGTTCGGCGATGCGACCTCCGATCGCGACGG
CGGTGGCGGACCGGGCGGCGCGGTACGGACCGCGGTGCTCGCCGTGCCGACCGCACAGGTCGATGCGCTCACGCTCGCCG
AGGCAAGCGGTCGTCTGACGCTCGCGCTGCGCAATCCGCGCGACACCGAAATCGCGACACAGACGGTCGCGGTTCGTACG
GGGGGCGGGGGCGCGACGCCGTCGGCGCAGGCCGCGAGCGGCGTATGGCTGGACGACCTGTCGGGTGGGCGTGCGCGTGC
TACACCCCGCGCGCCGGTTGTCCCGCGCGCGCCTGTGATGGCCCGGGGGAGCGGCAGCAGTATCGAAGTCATTCGTGGCG
GGCGTGCCGAAACGGTTGCCTATTGA

Upstream 100 bases:

>100_bases
ACCATCCTATGAGCCGGGCAGCATACACAGCGGGTCACATGCACACAGCGGTGTCCACGCGCGAACATAACAACATCAAT
CTACGGCACCGACATTCACC

Downstream 100 bases:

>100_bases
CATCAACGTACGATCATCGACAGCAGCTACGGAACAGAGAAGGCCGCGCGACGGCCCCGACACAATGACAAACAAACTGA
TTGCATACGCGATTGCTATC

Product: CpaB family Flp pilus assembly protein

Products: NA

Alternate protein names: Flp Pilus Assembly CpaB; Flp Pilus Assembly Protein; CpaB Family Flp Pilus Assembly Protein; Pilus Assembly Protein; Flp Pilus Assembly; Pilus Assembly Protein Cpab; Flp Type Pilus Assembly Protein; Signal Peptide Protein CpaB Like Protein; CpaB Pilus Assembly Protein; Signal Peptide Protein; Signal Peptide Protein CpaB Like; Transmembrane Fimbriae Assembly Protein; SAF Domain-Containing Protein

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQVPMMPTGGF
SDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSE
IPATQARLLLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT
GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVAY

Sequences:

>Translated_301_residues
MANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQVPMMPTGGF
SDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSE
IPATQARLLLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT
GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVAY
>Mature_300_residues
ANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQVPMMPTGGFS
DPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEI
PATQARLLLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRTG
GGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVAY

Specific function: Unknown

COG id: COG3745

COG function: function code U; Flp pilus assembly protein CpaB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30333; Mature: 30202

Theoretical pI: Translated: 10.91; Mature: 10.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCCEEEHHHCCCCC
PIPADALKLAQVPMMPTGGFSDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERA
CCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCEE
VAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLLSRVRVLSFGD
EEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHCCCC
ATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT
CCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEEEE
GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVA
CCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
Y
C
>Mature Secondary Structure 
ANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQ
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCCEEEHHHCCCCC
PIPADALKLAQVPMMPTGGFSDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERA
CCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCEE
VAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLLSRVRVLSFGD
EEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHCCCC
ATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT
CCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEEEE
GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVA
CCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC
Y
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA