| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351455
Identifier: 115351455
GI number: 115351455
Start: 1544893
End: 1545798
Strand: Direct
Name: 115351455
Synonym: Bamb_1402
Alternate gene names: NA
Gene position: 1544893-1545798 (Clockwise)
Preceding gene: 115351454
Following gene: 115351456
Centisome position: 43.44
GC content: 69.76
Gene sequence:
>906_bases ATGGCCAACAACTTGACGAAGATCATCGCCGGGCTGCTGATCGCAATCGCAGTCCTGCTCGGGATCTATGCATGGACGCT TGGCCGCGCGCCGGCTCATCCGCCGGTTGTGGCAACGCCGACCGTCGCGGCGCAATCGGTGCCGCTCGTCGTGGCCGCGC GCGTGCTGCCGGCCGGCCAGCCGATTCCCGCCGATGCATTGAAGCTGGCACAGGTGCCGATGATGCCGACTGGCGGGTTC AGCGATCCGACGGCCCTTGTCGGTCGCGTGCCGGCGAACGACATTCTTGCCGCAGCGCCGGTGCTCGAAGGCGCGTTGAC CTCCGGACTGGCCGACCAGGTGGCGCTTGGTGAGCGTGCCGTCGCCGTGAAGGTCGACGAATCGAACGCGGTCGGCAACC GGCTGCGGCCCGGCAACTTTGTCGACGTGTTCCTGAATCTGCGGCGTGACGGATCCGGCGGCGCCCAAGTGAATTCGGAG ATTCCCGCTACGCAGGCGCGCCTGCTGCTGTCGAGGGTCCGTGTGCTGTCGTTCGGCGATGCGACCTCCGATCGCGACGG CGGTGGCGGACCGGGCGGCGCGGTACGGACCGCGGTGCTCGCCGTGCCGACCGCACAGGTCGATGCGCTCACGCTCGCCG AGGCAAGCGGTCGTCTGACGCTCGCGCTGCGCAATCCGCGCGACACCGAAATCGCGACACAGACGGTCGCGGTTCGTACG GGGGGCGGGGGCGCGACGCCGTCGGCGCAGGCCGCGAGCGGCGTATGGCTGGACGACCTGTCGGGTGGGCGTGCGCGTGC TACACCCCGCGCGCCGGTTGTCCCGCGCGCGCCTGTGATGGCCCGGGGGAGCGGCAGCAGTATCGAAGTCATTCGTGGCG GGCGTGCCGAAACGGTTGCCTATTGA
Upstream 100 bases:
>100_bases ACCATCCTATGAGCCGGGCAGCATACACAGCGGGTCACATGCACACAGCGGTGTCCACGCGCGAACATAACAACATCAAT CTACGGCACCGACATTCACC
Downstream 100 bases:
>100_bases CATCAACGTACGATCATCGACAGCAGCTACGGAACAGAGAAGGCCGCGCGACGGCCCCGACACAATGACAAACAAACTGA TTGCATACGCGATTGCTATC
Product: CpaB family Flp pilus assembly protein
Products: NA
Alternate protein names: Flp Pilus Assembly CpaB; Flp Pilus Assembly Protein; CpaB Family Flp Pilus Assembly Protein; Pilus Assembly Protein; Flp Pilus Assembly; Pilus Assembly Protein Cpab; Flp Type Pilus Assembly Protein; Signal Peptide Protein CpaB Like Protein; CpaB Pilus Assembly Protein; Signal Peptide Protein; Signal Peptide Protein CpaB Like; Transmembrane Fimbriae Assembly Protein; SAF Domain-Containing Protein
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQVPMMPTGGF SDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSE IPATQARLLLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVAY
Sequences:
>Translated_301_residues MANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQVPMMPTGGF SDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSE IPATQARLLLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVAY >Mature_300_residues ANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQVPMMPTGGFS DPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEI PATQARLLLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRTG GGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVAY
Specific function: Unknown
COG id: COG3745
COG function: function code U; Flp pilus assembly protein CpaB
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30333; Mature: 30202
Theoretical pI: Translated: 10.91; Mature: 10.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQ CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCCEEEHHHCCCCC PIPADALKLAQVPMMPTGGFSDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERA CCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCEE VAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLLSRVRVLSFGD EEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHCCCC ATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT CCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEEEE GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVA CCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC Y C >Mature Secondary Structure ANNLTKIIAGLLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQ CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHCCCCCEEEHHHCCCCC PIPADALKLAQVPMMPTGGFSDPTALVGRVPANDILAAAPVLEGALTSGLADQVALGERA CCCHHHHHHHHCCCCCCCCCCCHHHHEECCCCHHHHHHHHHHHHHHHHCCHHHHHCCCEE VAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLLSRVRVLSFGD EEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCEECCCCCHHHHHHHHHHHHHHCCCC ATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVRT CCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEEECCCEEEEEECCCCCCCEEEEEEEEEE GGGGATPSAQAASGVWLDDLSGGRARATPRAPVVPRAPVMARGSGSSIEVIRGGRAETVA CCCCCCCCCHHHCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEECCCCCCCC Y C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA