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The map label for this gene is rbn [C]

Identifier: 115351390

GI number: 115351390

Start: 1469718

End: 1471049

Strand: Direct

Name: rbn [C]

Synonym: Bamb_1337

Alternate gene names: 115351390

Gene position: 1469718-1471049 (Clockwise)

Preceding gene: 115351385

Following gene: 115351392

Centisome position: 41.32

GC content: 67.72

Gene sequence:

>1332_bases
TTGCCGAAGTTGAGCGTCGATCTCGACACCATCAAGCGCCTCGCGCAATTCGCGGCCCGGCGCAGCGCCGAGGATCGCAT
CCCGCAAGTGGCGGGCAGCCTCACGTTCACGACGATGCTGGCACTCGTGCCGCTCGTGACGGTCGCGTTCGCGCTGTTCA
CCGCGTTCCCGATGTTCTCGTCGTTCCAGATCTCGCTGCAGGGGTTCCTCGCGGACCACCTGATGCCCGCGCAGTTCAAC
GTCCAGATCTTCAAGTACCTGAACCAGTTCGCGGCGAAAGCCAAGGGGCTGACGACGGCCGGCCTGATCGTGCTCGTCGT
CACGTCGGTGATGACGATGATGACGATCGAATCCGCGTTCAACCTGATCTGGCGCGTGCGCAAGCCGCGGCCGTTCGCGC
AGCGCGTGCTCGCGTACTGGGCGCTGATCACGCTCGGCCCGCTGCTGTTCGGCGTGAGCCTGTCGATTTCGTCGTACCTG
TTTACGCAGTCGCTGGCGTTCACCGGCGCCGCGCCGTCGACCTCGATCGTCGAGTGGCTGCTCGCGCTCGTGTCGCTGCC
GCTGACCGTGCTCGCGTTCACGCTGCTGTACGTGTACCTGCCGAACTGCACGGTCGCGTGGCGCGACGCTGTGATCGGCG
GGCTGTTCGCAGCCATCGCGTTCGAGCTCGCGAAGCGCGGCTTCGGCTATTACGTGCGGCGCATTCCGACCTACACGGCC
GTATACGGCGCGTTCGCGGCGCTGCCGGTGTTTCTGCTGTGGGTGTACCTGAGCTGGTTCATCGCGCTGCTCGGCGCGAT
GGTCGCGTCCGCGCTGCCGGCGATCCGCGTCGGCCAGTTCCATCGCATTCGCTATCCGGGCAGCGACCTGCTCGACGCGC
TCGAACTGCTCGCGCGGCTGGCCGAGGCGCACGAGGTCGGCAAGGCGGGCTATACGGCGACGCGGCTCGCGACCATGTTG
CGCTGCGACATGGAAACCGCGCAGCGGCTGCTGCTGACGATGGAGGAGCGGGAATGGATCGCGCGGCTGGATGGCGGTGA
AGTCGGGCCGCGCTACATCCTGCTGGCGAACCCGGCGCACCTGACGCTCGCGCAGCTGTTCGACGTGCTGGTGATCGACC
GCACCGAGCTGACCTACCAGCTGCAGCGGCGCCGCAGCCACGTCGATGGCGCGGCCTTGCTCGACGTGCTGACGAACGAC
CGGTTCGACGTATCGCTCGCGTCGCTGATCGCCGCGCACAGGCTCACAGGTGCACAGCCGGAGGAAAGCGTGCCCGGGCC
GGTGCCCGACGGGGCACCCGACCCGCACGCGCGGCCGCCGAAAACGGCGTGA

Upstream 100 bases:

>100_bases
GGCCCCTGCTGGATCGAGCGGCTATTATAGGGGCTGAAGTCGTCGCGCAGCGCGGCGGCGGCGCGCCGTCGGGCGCGCGG
CATCAAGAAGGAGAAACCGT

Downstream 100 bases:

>100_bases
CGCGGTGCCGGGCGGGCGTTACAGCCCGATCTTGCCGGTGCAGATGTCCTTGAACATCACCCAATCGCCCATCAGGCTGT
AGATCGGGTGCCGGAACGTG

Product: putative ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MPKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFSSFQISLQGFLADHLMPAQFN
VQIFKYLNQFAAKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSISSYL
FTQSLAFTGAAPSTSIVEWLLALVSLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAIAFELAKRGFGYYVRRIPTYTA
VYGAFAALPVFLLWVYLSWFIALLGAMVASALPAIRVGQFHRIRYPGSDLLDALELLARLAEAHEVGKAGYTATRLATML
RCDMETAQRLLLTMEEREWIARLDGGEVGPRYILLANPAHLTLAQLFDVLVIDRTELTYQLQRRRSHVDGAALLDVLTND
RFDVSLASLIAAHRLTGAQPEESVPGPVPDGAPDPHARPPKTA

Sequences:

>Translated_443_residues
MPKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFSSFQISLQGFLADHLMPAQFN
VQIFKYLNQFAAKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSISSYL
FTQSLAFTGAAPSTSIVEWLLALVSLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAIAFELAKRGFGYYVRRIPTYTA
VYGAFAALPVFLLWVYLSWFIALLGAMVASALPAIRVGQFHRIRYPGSDLLDALELLARLAEAHEVGKAGYTATRLATML
RCDMETAQRLLLTMEEREWIARLDGGEVGPRYILLANPAHLTLAQLFDVLVIDRTELTYQLQRRRSHVDGAALLDVLTND
RFDVSLASLIAAHRLTGAQPEESVPGPVPDGAPDPHARPPKTA
>Mature_442_residues
PKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFSSFQISLQGFLADHLMPAQFNV
QIFKYLNQFAAKAKGLTTAGLIVLVVTSVMTMMTIESAFNLIWRVRKPRPFAQRVLAYWALITLGPLLFGVSLSISSYLF
TQSLAFTGAAPSTSIVEWLLALVSLPLTVLAFTLLYVYLPNCTVAWRDAVIGGLFAAIAFELAKRGFGYYVRRIPTYTAV
YGAFAALPVFLLWVYLSWFIALLGAMVASALPAIRVGQFHRIRYPGSDLLDALELLARLAEAHEVGKAGYTATRLATMLR
CDMETAQRLLLTMEEREWIARLDGGEVGPRYILLANPAHLTLAQLFDVLVIDRTELTYQLQRRRSHVDGAALLDVLTNDR
FDVSLASLIAAHRLTGAQPEESVPGPVPDGAPDPHARPPKTA

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=265, Percent_Identity=39.2452830188679, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 48753; Mature: 48622

Theoretical pI: Translated: 9.50; Mature: 9.50

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PKLSVDLDTIKRLAQFAARRSAEDRIPQVAGSLTFTTMLALVPLVTVAFALFTAFPMFS
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH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CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA