Click here to switch to the map view.

The map label for this gene is yafC [C]

Identifier: 115351385

GI number: 115351385

Start: 1464990

End: 1465931

Strand: Direct

Name: yafC [C]

Synonym: Bamb_1332

Alternate gene names: 115351385

Gene position: 1464990-1465931 (Clockwise)

Preceding gene: 115351380

Following gene: 115351390

Centisome position: 41.19

GC content: 67.41

Gene sequence:

>942_bases
ATGGATACGTTACAAAACATGCGGGTATTCGTCCGCGTGGTCGATGCGGGAAGCTTTACCGCCGCCGCTCAGCAGATGAA
TTCGACGACCGCCTATGCGTCGCGCGCCGTGTCGGATCTCGAGGCGCACCTGCGCACGCGCCTTCTCAACCGCACGACAC
GCCGGATCGCGCTGACCGAGGCGGGCGAGCGCTACCTGCAGCGCTGCGAGCAGATCCTCGCGTATGTCGATCAGGCCGAA
GCCGAAGCGGGCGATGCGCACGCGCGCCCGTCGGGCAAGCTGAAGGTCCATTGCTTCACGAGCCTCGGGCAGCACTATCT
GGTGCCGGCCATTGCGCGCTACCGGCAGCGCTATCCGGACGTGCACGTCGAGCTGACGCTCGCGCAGCGGATGCCCGACC
TGCTCGACGAGGGGTACGACGTCGCGATCGTCGTCGGCCGCGACCTGCCCGATTCGGGGCTCGTGTCGCAGCGGCTCGGC
GAGAGCTACAGCGTGGTGTGCGCATCGCCCGGCTATGTCGACGCGCACGGCGCGCCGCATACGCCGGCGGATCTCGAGCA
GCACATTTGTCTCGGGATGGTCGCGCCGGGCTTTCACTTCGACGAGTGGGCGCTGTCGGGGCCGCACGGCGACGAGGTGA
TTCCGATCACGGCGCCGCCGTTCCGCGTGAACGTCGCGGAGGCGCTCGCGGTGGCCGTGCGGGAAGGGATGGGGATCGGC
GGGTTGCCGCTCTATTCGGCGATCGGCGGGCTGCGCAGCGGCAACATCGTGCGCGTGTTGCCCGAATACCGGTCGCACGT
GATGAACATCTACGCGCTGTATCCGTCGCGCCAGTACCTCGACGCGAAAATCCGCACCTGGGTCGATTTCCTGCGCGACG
AGTTGCCGGCCACGCTCGAAGCCGACGAAGCCGTGCTAGCGCAGTTCAGGGCTGCGACATGA

Upstream 100 bases:

>100_bases
CTGAATAAACGGACAACGGTGCAAGTCATTTTTACGAATCCTGAGATAATATTGGTTGGCCCCTGTGCAACAATCCACCC
GGATTCAAAGGGGTAATGGG

Downstream 100 bases:

>100_bases
CGGCGCGCCCGAGCCCGATCTGACGAGATTTGTCGTTCGTGCAACATTTTTTTACCATCGGCCGGCAGACAGTTTGATAC
TGTTGGATCATAGAGACATG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLG
ESYSVVCASPGYVDAHGAPHTPADLEQHICLGMVAPGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG
GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDELPATLEADEAVLAQFRAAT

Sequences:

>Translated_313_residues
MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLG
ESYSVVCASPGYVDAHGAPHTPADLEQHICLGMVAPGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG
GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDELPATLEADEAVLAQFRAAT
>Mature_313_residues
MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTEAGERYLQRCEQILAYVDQAE
AEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPDVHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLG
ESYSVVCASPGYVDAHGAPHTPADLEQHICLGMVAPGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG
GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDELPATLEADEAVLAQFRAAT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=292, Percent_Identity=35.2739726027397, Blast_Score=171, Evalue=5e-44,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=36.734693877551, Blast_Score=171, Evalue=6e-44,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=32.8719723183391, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789440, Length=287, Percent_Identity=29.2682926829268, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI145693193, Length=302, Percent_Identity=29.8013245033113, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=27.0547945205479, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1787589, Length=293, Percent_Identity=24.9146757679181, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1789173, Length=189, Percent_Identity=31.2169312169312, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788481, Length=295, Percent_Identity=25.4237288135593, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787879, Length=154, Percent_Identity=31.8181818181818, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI145693105, Length=122, Percent_Identity=28.6885245901639, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=32.520325203252, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=294, Percent_Identity=22.108843537415, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788706, Length=300, Percent_Identity=23, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787601, Length=173, Percent_Identity=24.8554913294798, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34412; Mature: 34412

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE
CCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHCCC
VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPH
EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCEEECCCCCC
TPADLEQHICLGMVAPGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG
CCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHHHCCCCC
GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDELPATLE
CCHHHHHHCCCCCCCEEEECHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
ADEAVLAQFRAAT
CHHHHHHHHHCCC
>Mature Secondary Structure
MDTLQNMRVFVRVVDAGSFTAAAQQMNSTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE
CCCHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHCFTSLGQHYLVPAIARYRQRYPD
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHHHHHHCCC
VHVELTLAQRMPDLLDEGYDVAIVVGRDLPDSGLVSQRLGESYSVVCASPGYVDAHGAPH
EEEEEEHHHHCHHHHHCCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCEEECCCCCC
TPADLEQHICLGMVAPGFHFDEWALSGPHGDEVIPITAPPFRVNVAEALAVAVREGMGIG
CCHHHHHHHHHHEECCCCCCCCCCCCCCCCCCEEEECCCCCEECHHHHHHHHHHHCCCCC
GLPLYSAIGGLRSGNIVRVLPEYRSHVMNIYALYPSRQYLDAKIRTWVDFLRDELPATLE
CCHHHHHHCCCCCCCEEEECHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
ADEAVLAQFRAAT
CHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]