| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351298
Identifier: 115351298
GI number: 115351298
Start: 1359901
End: 1361262
Strand: Direct
Name: 115351298
Synonym: Bamb_1245
Alternate gene names: NA
Gene position: 1359901-1361262 (Clockwise)
Preceding gene: 115351297
Following gene: 115351299
Centisome position: 38.24
GC content: 72.91
Gene sequence:
>1362_bases ATGACAGCAAAGCCACCACACGAACGGCGCGTGCGCATCGGCGCGGGCGCCGGCTACTCGGGCGACCGGATCGAGCCGGC GGTCGAACTGGCCGAACACGGACAGCTCGACTATCTCGTCTTCGAATGCCTGGCCGAGCGCACGATCGCGATCGCGCAGC AGGCGCGGCGCAAGGATCCGTCGCTCGGCTACGATCCGCTGCTCGACGCGCGCATGCAGGCCGTGCTGCCGGTGGCCGCG GCCAAGCGCGTGCGGATCGTGTCGAACATGGGCGCGGCCAACCCGCGCGCGGCCGCGCGGCGCACCGCGCAGATCGCGCG GTCGCTCGGCCTCGCGGGGCTGAAGGTCGCGGCGGTCGAAGGCGACGACGTGCTCGACGTCGTGCTGCGCGGCGCGTTGC GCTTCGAGGAGTCGGGCGACGAAGTCGCCGCGTATCGAGAGCGCATCGTATCCGCGAACGCGTATCTCGGCGCCGCGCCG ATCGTCGACGCGCTCGCGGCCGGCGCGGACGTCGTGCTGACCGGGCGCGTCGCCGATCCGTCGCTGTTCGCCGCGCCGCT GATCCATGCGTTCGGCTGGCGGATGGACGACTGGGACACGCTGGGGGCCGCGACGGTCGTCGGCCATTTGCTCGAATGCG CGGGGCAGGTGACGGGCGGCTATTTCGCCGACCCCGGCTACAAGGACGTGCCGGATCTCGCGCGGCTCGGCTTCCCGATC GGCGAGGTCGCGGCCGACGGCTCGGTCGTGATCACCAAGGTGCCGCACGCGGGCGGCCGCGTGAGCGCGGCGACCTGCAA GGAACAGCTGCTGTACGAGATCCACGATCCGGCGCGCTACCTGCAGCCCGACGTCGTCGCGGATTTCACGCGCGTGGCCG TCGCGGAGGAGGCGCCGGACCGCGTGCGCGTGACGGGCGGGCGCGGCACCGCGCGCCCCGACACCCTGAAGGTGTCGGTC GCGTATGTCGACGGTCATATCGGCGAAGGACAGATCTCGTACGGCGGGCCGGGGGCGCTGGCGCGCGCGCGGCTCGCGCT CGACATCGTGCGCGAGCGGCTTGCGCTCACCGGCGTGGCCGCGACCGAGTTGCGCTCCGATCTGATCGGCGTCGACGCGC TGTACGGCGACGCGACGCCCGTCGTGCGCGGCGAGCCGGCCGAAGTCCGCGTGCGGGTGGCTGGCCGCGCGGCGACTGCC GCCGAGGCCGCGCGGATCGGCAATGAAGTCGAGACGCTGTATACGAACGGGCCGGCCGGCGGCGGCGGCGCGTTCAAGTC GACCCGCGAGGTGATCGCGGTGCAGTCGGTGCTGCTGCCGCGCGCGGCCGTGACGCCGTCGTTTTCATTCGTGGAGGCCT GA
Upstream 100 bases:
>100_bases CCCGCTGCTGTTCGGCGCCTCGATCGTGATGACGATCGCGTGCGTCGTGCTGGGCGTTTTTTGATTGTTCCCGGCGCGCG CGCCGGATGACGGTACCGAC
Downstream 100 bases:
>100_bases TGCAACTGCGTGAACTCGCGCATGCGCGCACCGGCGACAAGGGCAATACGCTGAACGTGTCGGTCATCTGCCGCGATCCG CGACACTACGAGCACCTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 453; Mature: 452
Protein sequence:
>453_residues MTAKPPHERRVRIGAGAGYSGDRIEPAVELAEHGQLDYLVFECLAERTIAIAQQARRKDPSLGYDPLLDARMQAVLPVAA AKRVRIVSNMGAANPRAAARRTAQIARSLGLAGLKVAAVEGDDVLDVVLRGALRFEESGDEVAAYRERIVSANAYLGAAP IVDALAAGADVVLTGRVADPSLFAAPLIHAFGWRMDDWDTLGAATVVGHLLECAGQVTGGYFADPGYKDVPDLARLGFPI GEVAADGSVVITKVPHAGGRVSAATCKEQLLYEIHDPARYLQPDVVADFTRVAVAEEAPDRVRVTGGRGTARPDTLKVSV AYVDGHIGEGQISYGGPGALARARLALDIVRERLALTGVAATELRSDLIGVDALYGDATPVVRGEPAEVRVRVAGRAATA AEAARIGNEVETLYTNGPAGGGGAFKSTREVIAVQSVLLPRAAVTPSFSFVEA
Sequences:
>Translated_453_residues MTAKPPHERRVRIGAGAGYSGDRIEPAVELAEHGQLDYLVFECLAERTIAIAQQARRKDPSLGYDPLLDARMQAVLPVAA AKRVRIVSNMGAANPRAAARRTAQIARSLGLAGLKVAAVEGDDVLDVVLRGALRFEESGDEVAAYRERIVSANAYLGAAP IVDALAAGADVVLTGRVADPSLFAAPLIHAFGWRMDDWDTLGAATVVGHLLECAGQVTGGYFADPGYKDVPDLARLGFPI GEVAADGSVVITKVPHAGGRVSAATCKEQLLYEIHDPARYLQPDVVADFTRVAVAEEAPDRVRVTGGRGTARPDTLKVSV AYVDGHIGEGQISYGGPGALARARLALDIVRERLALTGVAATELRSDLIGVDALYGDATPVVRGEPAEVRVRVAGRAATA AEAARIGNEVETLYTNGPAGGGGAFKSTREVIAVQSVLLPRAAVTPSFSFVEA >Mature_452_residues TAKPPHERRVRIGAGAGYSGDRIEPAVELAEHGQLDYLVFECLAERTIAIAQQARRKDPSLGYDPLLDARMQAVLPVAAA KRVRIVSNMGAANPRAAARRTAQIARSLGLAGLKVAAVEGDDVLDVVLRGALRFEESGDEVAAYRERIVSANAYLGAAPI VDALAAGADVVLTGRVADPSLFAAPLIHAFGWRMDDWDTLGAATVVGHLLECAGQVTGGYFADPGYKDVPDLARLGFPIG EVAADGSVVITKVPHAGGRVSAATCKEQLLYEIHDPARYLQPDVVADFTRVAVAEEAPDRVRVTGGRGTARPDTLKVSVA YVDGHIGEGQISYGGPGALARARLALDIVRERLALTGVAATELRSDLIGVDALYGDATPVVRGEPAEVRVRVAGRAATAA EAARIGNEVETLYTNGPAGGGGAFKSTREVIAVQSVLLPRAAVTPSFSFVEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47405; Mature: 47274
Theoretical pI: Translated: 5.74; Mature: 5.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAKPPHERRVRIGAGAGYSGDRIEPAVELAEHGQLDYLVFECLAERTIAIAQQARRKDP CCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC SLGYDPLLDARMQAVLPVAAAKRVRIVSNMGAANPRAAARRTAQIARSLGLAGLKVAAVE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC GDDVLDVVLRGALRFEESGDEVAAYRERIVSANAYLGAAPIVDALAAGADVVLTGRVADP CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCC SLFAAPLIHAFGWRMDDWDTLGAATVVGHLLECAGQVTGGYFADPGYKDVPDLARLGFPI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHCCCH GEVAADGSVVITKVPHAGGRVSAATCKEQLLYEIHDPARYLQPDVVADFTRVAVAEEAPD HHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCC RVRVTGGRGTARPDTLKVSVAYVDGHIGEGQISYGGPGALARARLALDIVRERLALTGVA CEEEECCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ATELRSDLIGVDALYGDATPVVRGEPAEVRVRVAGRAATAAEAARIGNEVETLYTNGPAG HHHHHHHHHCHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCHHEEEEECCCCC GGGAFKSTREVIAVQSVLLPRAAVTPSFSFVEA CCCCHHHHHHHHHHHHHHHCHHHCCCCCHHHCC >Mature Secondary Structure TAKPPHERRVRIGAGAGYSGDRIEPAVELAEHGQLDYLVFECLAERTIAIAQQARRKDP CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC SLGYDPLLDARMQAVLPVAAAKRVRIVSNMGAANPRAAARRTAQIARSLGLAGLKVAAVE CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEC GDDVLDVVLRGALRFEESGDEVAAYRERIVSANAYLGAAPIVDALAAGADVVLTGRVADP CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEECCCCCC SLFAAPLIHAFGWRMDDWDTLGAATVVGHLLECAGQVTGGYFADPGYKDVPDLARLGFPI HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHCCCH GEVAADGSVVITKVPHAGGRVSAATCKEQLLYEIHDPARYLQPDVVADFTRVAVAEEAPD HHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCC RVRVTGGRGTARPDTLKVSVAYVDGHIGEGQISYGGPGALARARLALDIVRERLALTGVA CEEEECCCCCCCCCEEEEEEEEECCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHH ATELRSDLIGVDALYGDATPVVRGEPAEVRVRVAGRAATAAEAARIGNEVETLYTNGPAG HHHHHHHHHCHHHHCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCHHEEEEECCCCC GGGAFKSTREVIAVQSVLLPRAAVTPSFSFVEA CCCCHHHHHHHHHHHHHHHCHHHCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA