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The map label for this gene is bcd [H]

Identifier: 115351286

GI number: 115351286

Start: 1345955

End: 1347784

Strand: Direct

Name: bcd [H]

Synonym: Bamb_1233

Alternate gene names: 115351286

Gene position: 1345955-1347784 (Clockwise)

Preceding gene: 115351285

Following gene: 115351287

Centisome position: 37.84

GC content: 69.56

Gene sequence:

>1830_bases
ATGAGTCTGCTGATGTCGCGACGCGATCTCGCGTTCCTGCTGTACGACTGGCTTGATGCCGACGCGCTCGGCGCGCTGCC
GCGCTATGCGGAGCACAGCCGCGAGACCTTCGATGCGGTGCTCGATACCAGCGAGCGAATCGCCGCCGACCTGTTCGCGC
CGCACGCGGCGCGCGGCGATCGCGAGGAGCCGCGGTTCGACGGCGAGCGCGTGACGCTGATCCCCGAAGTCGAGCCGGCC
GTGCGGGCCTTCGCGGCTGCCGGCCTGATCGCCGCGGGCCAGGACGAAGCGTTCGGCGGGATGCGGTTGCCGAAGCTCGT
CGAAGCCGCATCGTTCCTGTTCTTCCAGGCCGCGAACATCGCGACCGCCGCGTATCCGTTCCTCACCGTCGCGAACGCCA
ACCTGCTGCTCGCGCACGGCAGCCCCGCGCAGATCGACGCGTTCGCGCGTCCCGAGCTGGAAGGGCGCTTCTTCGGCACG
ATGTGCCTGTCGGAGCCGCAGGCCGGCTCGTCGCTGTCCGACATCGTCACGCGCGCCGATTTCGAGTGTGCGTCGCCGCT
CGGCCCGCGCTACCGGATCACTGGCAACAAGATGTGGATTTCCGGCGGCGAGCACGAGCTGGCCGAGAACATCGTCCATC
TCGTGCTCGCGAAGATTCCCGACGAACAGGGCCGGCTTCTGCCCGGCACGCGCGGCATCTCGCTGTTCATCGTCCCCAGG
TACCTGCCGACCGACGACGGCGCCGCGCGCGGCGAGCACAACGACGTGGTGCTGGCCGGCCTGAATCACAAGATGGGCTA
TCGCGGTACGACCAACTGCCTGCTGAACTTCGGCGAAGGCACGCGCCATCGTCCGCAGGGTCGCGCCGGCGCGATCGGCT
ATCTGGTCGGCGAACCGAATCACGGCCTCGCCTACATGTTCCACATGATGAACGAGGCGCGCATCGGCGTCGGCGCGGGC
GCGGTGGCGCTCGGCTACACCGGCTACCTGCACGCGCTCGACTACGCGCGCAACCGGCCGCAGGGGCGTGCGCTCGGACC
GGCCGGCAAGGACGCGGCCGCGCCGCAGGCGCCGATCGTCGCGCATCCGGACGTGCGACGCATGCTGCTCGCGCAGAAGG
CGTACGTCGAAGGCGGGCTCGCGCTGATCCTGTACTGCGCGCGGCTCGTCGACGAAGCGCGCGCGCATGACGATGCGGCG
CTGCGCGTGGAGGCCGCGCAACTGCTGGACATCCTGACGCCGATCGCGAAAAGCTGGCCGTCGCAGTGGTGCCTCGCGGC
CAACGATCTCGCAATCCAGGTGCATGGCGGCTACGGTTATACACGCGACTATCCGGTCGAGCGACTGTATCGCGACAACC
GCCTGAACCCCATCCACGAAGGCACGCACGGCATCCAGGCGCTCGACCTGCTGGGCCGCAAGGTCGGCCAGGACGACGGT
GCGCTGCTGCGCACGCTCGATGCGCGCATCGGCGCGACGCTCCAGCGCGCACGGGCCGCGGACGGCGACCCGCACTCGCA
TGCCGATGCGCTCGCGCGGCGCTGGGCGCGGCTCGTCGAGCTCACGCGCGCGCTGGCCGCGCTTGACGATCCGCAGGTAC
GGCTCGCGAATGCGAGCGTCTACCTGGAGGCGTTCGGCCATCTGGTCGTCGCGTGGCTGTGGCTCGACGTGACGCTTGCC
GCGCACGGGCACGACAGCGATTTCCACGACGGCAAGCGCGCCGCCGCGCGTTACTTCTTTCGCTGGGAGCTGCCGAAGGT
GGATGCGCAGCTCGATCTGCTGGCGAGCGTCGATACGACGACGCTCGAGATGCGCGACGCATGGTTCTGA

Upstream 100 bases:

>100_bases
CGATCGAGCACCCGTGGATCGACCGGGCCGCGCACGGTCGGACCGCGCACGCGCGGCCGTCGGCGATGGGGAAAACGCAG
GCCACGCGGAGGGCGTCACG

Downstream 100 bases:

>100_bases
GCGTCGCGATGCACGGATGACGGTGCCGCGGTGCAGGCCGATGTGCGTGCGCCGCGCGCCGCTTGCGCGGGCGTGTCCCG
CTGCCGTATCGATGCGCGGC

Product: acyl-CoA dehydrogenase domain-containing protein

Products: NA

Alternate protein names: Butyryl-CoA dehydrogenase; SCAD [H]

Number of amino acids: Translated: 609; Mature: 608

Protein sequence:

>609_residues
MSLLMSRRDLAFLLYDWLDADALGALPRYAEHSRETFDAVLDTSERIAADLFAPHAARGDREEPRFDGERVTLIPEVEPA
VRAFAAAGLIAAGQDEAFGGMRLPKLVEAASFLFFQAANIATAAYPFLTVANANLLLAHGSPAQIDAFARPELEGRFFGT
MCLSEPQAGSSLSDIVTRADFECASPLGPRYRITGNKMWISGGEHELAENIVHLVLAKIPDEQGRLLPGTRGISLFIVPR
YLPTDDGAARGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGTRHRPQGRAGAIGYLVGEPNHGLAYMFHMMNEARIGVGAG
AVALGYTGYLHALDYARNRPQGRALGPAGKDAAAPQAPIVAHPDVRRMLLAQKAYVEGGLALILYCARLVDEARAHDDAA
LRVEAAQLLDILTPIAKSWPSQWCLAANDLAIQVHGGYGYTRDYPVERLYRDNRLNPIHEGTHGIQALDLLGRKVGQDDG
ALLRTLDARIGATLQRARAADGDPHSHADALARRWARLVELTRALAALDDPQVRLANASVYLEAFGHLVVAWLWLDVTLA
AHGHDSDFHDGKRAAARYFFRWELPKVDAQLDLLASVDTTTLEMRDAWF

Sequences:

>Translated_609_residues
MSLLMSRRDLAFLLYDWLDADALGALPRYAEHSRETFDAVLDTSERIAADLFAPHAARGDREEPRFDGERVTLIPEVEPA
VRAFAAAGLIAAGQDEAFGGMRLPKLVEAASFLFFQAANIATAAYPFLTVANANLLLAHGSPAQIDAFARPELEGRFFGT
MCLSEPQAGSSLSDIVTRADFECASPLGPRYRITGNKMWISGGEHELAENIVHLVLAKIPDEQGRLLPGTRGISLFIVPR
YLPTDDGAARGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGTRHRPQGRAGAIGYLVGEPNHGLAYMFHMMNEARIGVGAG
AVALGYTGYLHALDYARNRPQGRALGPAGKDAAAPQAPIVAHPDVRRMLLAQKAYVEGGLALILYCARLVDEARAHDDAA
LRVEAAQLLDILTPIAKSWPSQWCLAANDLAIQVHGGYGYTRDYPVERLYRDNRLNPIHEGTHGIQALDLLGRKVGQDDG
ALLRTLDARIGATLQRARAADGDPHSHADALARRWARLVELTRALAALDDPQVRLANASVYLEAFGHLVVAWLWLDVTLA
AHGHDSDFHDGKRAAARYFFRWELPKVDAQLDLLASVDTTTLEMRDAWF
>Mature_608_residues
SLLMSRRDLAFLLYDWLDADALGALPRYAEHSRETFDAVLDTSERIAADLFAPHAARGDREEPRFDGERVTLIPEVEPAV
RAFAAAGLIAAGQDEAFGGMRLPKLVEAASFLFFQAANIATAAYPFLTVANANLLLAHGSPAQIDAFARPELEGRFFGTM
CLSEPQAGSSLSDIVTRADFECASPLGPRYRITGNKMWISGGEHELAENIVHLVLAKIPDEQGRLLPGTRGISLFIVPRY
LPTDDGAARGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGTRHRPQGRAGAIGYLVGEPNHGLAYMFHMMNEARIGVGAGA
VALGYTGYLHALDYARNRPQGRALGPAGKDAAAPQAPIVAHPDVRRMLLAQKAYVEGGLALILYCARLVDEARAHDDAAL
RVEAAQLLDILTPIAKSWPSQWCLAANDLAIQVHGGYGYTRDYPVERLYRDNRLNPIHEGTHGIQALDLLGRKVGQDDGA
LLRTLDARIGATLQRARAADGDPHSHADALARRWARLVELTRALAALDDPQVRLANASVYLEAFGHLVVAWLWLDVTLAA
HGHDSDFHDGKRAAARYFFRWELPKVDAQLDLLASVDTTTLEMRDAWF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=397, Percent_Identity=28.2115869017632, Blast_Score=106, Evalue=7e-23,
Organism=Homo sapiens, GI4557233, Length=447, Percent_Identity=28.1879194630872, Blast_Score=97, Evalue=5e-20,
Organism=Homo sapiens, GI21361497, Length=317, Percent_Identity=27.7602523659306, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI4501857, Length=391, Percent_Identity=25.8312020460358, Blast_Score=84, Evalue=5e-16,
Organism=Homo sapiens, GI4557235, Length=337, Percent_Identity=26.7062314540059, Blast_Score=83, Evalue=8e-16,
Organism=Homo sapiens, GI76496475, Length=337, Percent_Identity=26.7062314540059, Blast_Score=83, Evalue=8e-16,
Organism=Homo sapiens, GI7656849, Length=380, Percent_Identity=23.1578947368421, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI87082384, Length=380, Percent_Identity=26.5789473684211, Blast_Score=89, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17569725, Length=444, Percent_Identity=25.4504504504505, Blast_Score=87, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI86563381, Length=577, Percent_Identity=22.5303292894281, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI86563383, Length=577, Percent_Identity=22.5303292894281, Blast_Score=85, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17534899, Length=319, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI21356377, Length=443, Percent_Identity=25.9593679458239, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24666513, Length=437, Percent_Identity=25.4004576659039, Blast_Score=94, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24646207, Length=441, Percent_Identity=27.2108843537415, Blast_Score=89, Evalue=8e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: =1.3.99.2 [H]

Molecular weight: Translated: 66444; Mature: 66313

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS00073 ACYL_COA_DH_2 ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLMSRRDLAFLLYDWLDADALGALPRYAEHSRETFDAVLDTSERIAADLFAPHAARGD
CCCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
REEPRFDGERVTLIPEVEPAVRAFAAAGLIAAGQDEAFGGMRLPKLVEAASFLFFQAANI
CCCCCCCCCEEEEECCCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ATAAYPFLTVANANLLLAHGSPAQIDAFARPELEGRFFGTMCLSEPQAGSSLSDIVTRAD
HHHHCCEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCC
FECASPLGPRYRITGNKMWISGGEHELAENIVHLVLAKIPDEQGRLLPGTRGISLFIVPR
CCCCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC
YLPTDDGAARGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGTRHRPQGRAGAIGYLVGEPN
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCCEEEEEECCCC
HGLAYMFHMMNEARIGVGAGAVALGYTGYLHALDYARNRPQGRALGPAGKDAAAPQAPIV
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
AHPDVRRMLLAQKAYVEGGLALILYCARLVDEARAHDDAALRVEAAQLLDILTPIAKSWP
ECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHCCC
SQWCLAANDLAIQVHGGYGYTRDYPVERLYRDNRLNPIHEGTHGIQALDLLGRKVGQDDG
CCEEEEECCEEEEEECCCCCCCCCCHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHCCCCC
ALLRTLDARIGATLQRARAADGDPHSHADALARRWARLVELTRALAALDDPQVRLANASV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
YLEAFGHLVVAWLWLDVTLAAHGHDSDFHDGKRAAARYFFRWELPKVDAQLDLLASVDTT
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHCCCCCE
TLEMRDAWF
EEECCCCCC
>Mature Secondary Structure 
SLLMSRRDLAFLLYDWLDADALGALPRYAEHSRETFDAVLDTSERIAADLFAPHAARGD
CCCCCCCCHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC
REEPRFDGERVTLIPEVEPAVRAFAAAGLIAAGQDEAFGGMRLPKLVEAASFLFFQAANI
CCCCCCCCCEEEEECCCCHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ATAAYPFLTVANANLLLAHGSPAQIDAFARPELEGRFFGTMCLSEPQAGSSLSDIVTRAD
HHHHCCEEEEECCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHCC
FECASPLGPRYRITGNKMWISGGEHELAENIVHLVLAKIPDEQGRLLPGTRGISLFIVPR
CCCCCCCCCCEEEECCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEC
YLPTDDGAARGEHNDVVLAGLNHKMGYRGTTNCLLNFGEGTRHRPQGRAGAIGYLVGEPN
CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCCCCCCCCCCCCCEEEEEECCCC
HGLAYMFHMMNEARIGVGAGAVALGYTGYLHALDYARNRPQGRALGPAGKDAAAPQAPIV
CCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEE
AHPDVRRMLLAQKAYVEGGLALILYCARLVDEARAHDDAALRVEAAQLLDILTPIAKSWP
ECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHHHHHHCCC
SQWCLAANDLAIQVHGGYGYTRDYPVERLYRDNRLNPIHEGTHGIQALDLLGRKVGQDDG
CCEEEEECCEEEEEECCCCCCCCCCHHHHHHCCCCCCHHCCCHHHHHHHHHHHHHCCCCC
ALLRTLDARIGATLQRARAADGDPHSHADALARRWARLVELTRALAALDDPQVRLANASV
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHH
YLEAFGHLVVAWLWLDVTLAAHGHDSDFHDGKRAAARYFFRWELPKVDAQLDLLASVDTT
HHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHCCCCCE
TLEMRDAWF
EEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8655474; 11466286 [H]