| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is yjjL [C]
Identifier: 115351219
GI number: 115351219
Start: 1274289
End: 1275521
Strand: Direct
Name: yjjL [C]
Synonym: Bamb_1166
Alternate gene names: 115351219
Gene position: 1274289-1275521 (Clockwise)
Preceding gene: 115351218
Following gene: 115351220
Centisome position: 35.83
GC content: 70.15
Gene sequence:
>1233_bases ATGTCATCGGTGCAGGCGAGGGTGCTCGCGCTGTTTGCGATCGGGTATTTCGTGTCGTATGTGTTCCGCGGCGTCAATCT CGGCTTCGCGCCGTTCGTCACGCACGAGCTCGGGCTGTCGGCCGCCGATCTCGGGCTGCTCACCAGCCTCTATTTCCTCG GCTTCGCCGGCGCGCAAATTCCGGCCGGCGTGCTGCTCGACCATTTCGGCCCGCGCCGCGTGACGGCCGGCATGCTGCTG TTCGCGGCGGCTGGTGCCGCGGTGTTCGGCGTCGCGCACGACCTCGGCACGATGATGATCGGCCGGCTCCTGATCGGCGT CGGCGTATCGGTGTGCCTCGGTGCGGCGTTCAAGGCGCTCGCGCAGCATTTTCCGGTCGGCCGGTTGCCGCTCCTCAATG GTCTCGTGATGGCGGTCGGCGGCCTCGGCGGCGTCGCGGTCGGCTCGCCGCTGACCTGGCTGCTCGGGTTCGCGAGCTGG CGCGCGATCTGCGGCGGCCTCGCGGTGCTGACGATCATCGTCGCCGCCGCGATCGGCTTCGGCGCGCCGGAAGCCGAACG GCCACGCCACCAGGGCGGGCTCGTCAGCCAGTTCAAGGGCACCTGGCACATCCTGAGCAGCCGCGCGTTCTGGAAGATCT CGTCGTTCTCGGTCGTCACGCAGGGCGTGTTCTACGCGATGCAGTCGCTGTGGGTCGGGCCGTACCTGCGCGATGTCGCG GGGTTCGATGCGCAGCGCGCGGCCCAGCTCGTGTCGGTGCTCGGGTTCGCGATGATGGCCGGCTGCGTCGGCTTCGGCGC GGCGGCGCGCGTGCTCGAGCGGCGCGGGGTGTCCGTCCAGGCGTTTTGCGGCGTCGGCATGGCGTTGTTCGTCGCGACGC AAGCCGCGATCGTCGCGCGCGTCCCGCTGCCGCCGGCCGTACTGTGGGCGGCGTACGGGATGTTCGGCGGCGTCGGGATC CTGACCTATGCGGTGCTGGCCCGTCATTTCCCGGCCCATCTGATCGGCCGCGCGAACACGACGCTCACGCTCGTGATCTT CGTGCTGATCTTTGCGTTCCAGATCGGCATCGGCGCGGTGCTGTCGCACTGGCCGGCGATGGACGGCCATTACCCGGCCG CCGCACACTTCACCGCGTGGAGCGCGCTGCTCGCGCTGCAACTCGCGAGCGCGGTCTGGTACGCGTGGCCCGAGCGCGGC GCTGGCAAGCAGGGTGATCCGGCGGTACGCTGA
Upstream 100 bases:
>100_bases CGAAACGCGAGGCAACGCCGTCACCGAGGTGACGGCGTTTTCATTTGTGCGCGGCGGCGCGGCCGCTGTTGCGCCAGACG TGGAACAACAAGGAGAGGCG
Downstream 100 bases:
>100_bases CGGGTAGGGCGGCCTGCGCAAACGGGGCCGCAGCAGCAGCGCACGGCGCGCGGTCGCGGCAGGCCGCATGCATGATCGGA CGGCCATATCGATTGAAGAT
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Transporter; Transporter MFS Superfamily; Carbohydrate Transport Membrane Protein; MFS Family Transporter; Facilitator Family Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 410; Mature: 409
Protein sequence:
>410_residues MSSVQARVLALFAIGYFVSYVFRGVNLGFAPFVTHELGLSAADLGLLTSLYFLGFAGAQIPAGVLLDHFGPRRVTAGMLL FAAAGAAVFGVAHDLGTMMIGRLLIGVGVSVCLGAAFKALAQHFPVGRLPLLNGLVMAVGGLGGVAVGSPLTWLLGFASW RAICGGLAVLTIIVAAAIGFGAPEAERPRHQGGLVSQFKGTWHILSSRAFWKISSFSVVTQGVFYAMQSLWVGPYLRDVA GFDAQRAAQLVSVLGFAMMAGCVGFGAAARVLERRGVSVQAFCGVGMALFVATQAAIVARVPLPPAVLWAAYGMFGGVGI LTYAVLARHFPAHLIGRANTTLTLVIFVLIFAFQIGIGAVLSHWPAMDGHYPAAAHFTAWSALLALQLASAVWYAWPERG AGKQGDPAVR
Sequences:
>Translated_410_residues MSSVQARVLALFAIGYFVSYVFRGVNLGFAPFVTHELGLSAADLGLLTSLYFLGFAGAQIPAGVLLDHFGPRRVTAGMLL FAAAGAAVFGVAHDLGTMMIGRLLIGVGVSVCLGAAFKALAQHFPVGRLPLLNGLVMAVGGLGGVAVGSPLTWLLGFASW RAICGGLAVLTIIVAAAIGFGAPEAERPRHQGGLVSQFKGTWHILSSRAFWKISSFSVVTQGVFYAMQSLWVGPYLRDVA GFDAQRAAQLVSVLGFAMMAGCVGFGAAARVLERRGVSVQAFCGVGMALFVATQAAIVARVPLPPAVLWAAYGMFGGVGI LTYAVLARHFPAHLIGRANTTLTLVIFVLIFAFQIGIGAVLSHWPAMDGHYPAAAHFTAWSALLALQLASAVWYAWPERG AGKQGDPAVR >Mature_409_residues SSVQARVLALFAIGYFVSYVFRGVNLGFAPFVTHELGLSAADLGLLTSLYFLGFAGAQIPAGVLLDHFGPRRVTAGMLLF AAAGAAVFGVAHDLGTMMIGRLLIGVGVSVCLGAAFKALAQHFPVGRLPLLNGLVMAVGGLGGVAVGSPLTWLLGFASWR AICGGLAVLTIIVAAAIGFGAPEAERPRHQGGLVSQFKGTWHILSSRAFWKISSFSVVTQGVFYAMQSLWVGPYLRDVAG FDAQRAAQLVSVLGFAMMAGCVGFGAAARVLERRGVSVQAFCGVGMALFVATQAAIVARVPLPPAVLWAAYGMFGGVGIL TYAVLARHFPAHLIGRANTTLTLVIFVLIFAFQIGIGAVLSHWPAMDGHYPAAAHFTAWSALLALQLASAVWYAWPERGA GKQGDPAVR
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42814; Mature: 42683
Theoretical pI: Translated: 10.37; Mature: 10.37
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSVQARVLALFAIGYFVSYVFRGVNLGFAPFVTHELGLSAADLGLLTSLYFLGFAGAQI CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC PAGVLLDHFGPRRVTAGMLLFAAAGAAVFGVAHDLGTMMIGRLLIGVGVSVCLGAAFKAL CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQHFPVGRLPLLNGLVMAVGGLGGVAVGSPLTWLLGFASWRAICGGLAVLTIIVAAAIGF HHHCCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GAPEAERPRHQGGLVSQFKGTWHILSSRAFWKISSFSVVTQGVFYAMQSLWVGPYLRDVA CCCCCCCCCCCCCCHHHHCCHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHCHHHHHHH GFDAQRAAQLVSVLGFAMMAGCVGFGAAARVLERRGVSVQAFCGVGMALFVATQAAIVAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHEE VPLPPAVLWAAYGMFGGVGILTYAVLARHFPAHLIGRANTTLTLVIFVLIFAFQIGIGAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LSHWPAMDGHYPAAAHFTAWSALLALQLASAVWYAWPERGAGKQGDPAVR HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure SSVQARVLALFAIGYFVSYVFRGVNLGFAPFVTHELGLSAADLGLLTSLYFLGFAGAQI CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC PAGVLLDHFGPRRVTAGMLLFAAAGAAVFGVAHDLGTMMIGRLLIGVGVSVCLGAAFKAL CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AQHFPVGRLPLLNGLVMAVGGLGGVAVGSPLTWLLGFASWRAICGGLAVLTIIVAAAIGF HHHCCCCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GAPEAERPRHQGGLVSQFKGTWHILSSRAFWKISSFSVVTQGVFYAMQSLWVGPYLRDVA CCCCCCCCCCCCCCHHHHCCHHHHHCCCHHEEEHHHHHHHHHHHHHHHHHHHCHHHHHHH GFDAQRAAQLVSVLGFAMMAGCVGFGAAARVLERRGVSVQAFCGVGMALFVATQAAIVAR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHEE VPLPPAVLWAAYGMFGGVGILTYAVLARHFPAHLIGRANTTLTLVIFVLIFAFQIGIGAV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH LSHWPAMDGHYPAAAHFTAWSALLALQLASAVWYAWPERGAGKQGDPAVR HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA