| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is iorB [H]
Identifier: 115351129
GI number: 115351129
Start: 1168367
End: 1170571
Strand: Direct
Name: iorB [H]
Synonym: Bamb_1075
Alternate gene names: 115351129
Gene position: 1168367-1170571 (Clockwise)
Preceding gene: 115351128
Following gene: 115351130
Centisome position: 32.85
GC content: 70.98
Gene sequence:
>2205_bases ATGTCGCGGCCGGCTGACGCGGGGCGGGCGCGGCATGCGCCGAACGCGTCCCGGCGCGTGTTCCTGAAAGGCGGCGTCGC GCTGGCGGGTAGCCTGCTGCTGCCGCTCGCGATCGGCGACGTCGTGCATGCGGCCGGCGACGGCGCGCGCTTTCGCGAGA TCAACGACTGGGTGCGCATCGACGCCGATGGCAGGACGATCATCGGCCTGTCGCAGGCGGAAGTCGGGCAGGGCGTCTAC ACGGGGCTGCCGCAGGTGCTCGCCGACGAGATGGATGCCGACTGGCGCAGCGTGACGGTCGAGTTCGTCACGGGGCGCGA TGCGTACCGGATCGACGCCGCGAACGAGGCGCCACAGCAGTTCGTCGGCGCGTCGATGTCGGCGACGATGTTCTACACGC GGCTGCGCATCGCGGGCGCGCAGGCGCGCTCGGCGTTCCTGCGGGCCGGTGCCGCGCGGCTCGGCGTGCGCGACACGCAG TGCGTGACGCGCGACGGCCGCGTGATCCATGCGCCGAGCGGCCGGTCGCTGTCGTATGGCGCGCTCGTCGACGCCGCCGC GAAGCTGCCGCCCGATCCGCAGCCGCGCCTGAAGCCGCCGTCCGCGCACACGTTGATCGGGCGTTCGCTGCACAAGCTCG ACGTGCCCGCAAAGGTCGACGGCAGCGCGATCTTCGGTATCGACGTGCAGGTGCCCGACATGCTGGTCGGCGCGCTGACG ATGGCGCCGACGCTGAACGGCCGGCCGACGGCCGTGAAGAACCGCGACGCGCTGCGCGCGATGCCGGGCGTCGTCGACGT CGTGATCGCGAAGGATGCGGTGATCGTCGTCGCGCCCACCTACTGGCAGGCGAAGAAGGCGTGCGACGCGGCGGACATCG TGTGGGACGCGGGCACGACACCGGCGTTCGACAGCGCGACGATCCTCGCGCAGCGCAAGGGCGCGCTGCAGGCCGAGCAC GCGGTGGTCGCGACGACGATCGGCGAGCCCGCGCGCCGGCTCGCCGAGGCCGGCACGATCGTCGAAGCCGACTACCACAC GCCGTACATCGTTCACGCGACGATGGAACCCGTCAACGCGACCGTGCACGTGCGGCCGGGCGAGATCGAGGTGTGGGGGC CGATCCAGGGGCAGGACAAGGTGCGCTGGACGCTGTCGGCGCTGTTCAACGTGCCGGCCGAGCGCGTGATCGTCAACACG ACGTTTCTCGGCGGCAGCTTCGGCCGCAAGTACGTGCCGGATTTCGTCGTGCATGCGGCCGTCGCGTCGAAGGCGGTCGG GCGGCCCGTGAAGGTGATCCGCTCGCGCGAGGACGACATCCGTCACGGCTTCTATCGGCCGTGCGCGTCCGCGCGGTTGC GCGCGGCGCTCGGCCACGACGGGCTGCCCGTCGCGCTGCATGCGCGCGTCGCCGGCCACTCGCTGTATGCGGCGATCAAG CGCGACCGTTACGAGCAGGCGGGCGGCTGGGACGAGACGATGCTCGACGGCCTGTACGACCTTTGCTACGACGTGCCGAA CCTGCTGGTCGATTCGGTCACGGTGATGCAGCCGATTCCGGTCAGCTTCATGCGCAGCGTCGGCAGCACGTCGACGGTGT TTTTCCTCGAGAGTTTCGTGAACGAGCTCGCGCACACCGTACGTGCCGACCCCGTGCGATACCGGCGTGCATTGCTGAAG CACGACCCGCTCGCGCTGCGCGTGCTCGACGCGACGGCCGCGCGCGCGAACTGGTTCGGCCGCGCGCCGGCCGGCGTGTC GCGCGGCGTCGCGTATTCGCTGTACACGGGGCGCGGCGGCGCGTTCCGCACCTACGTCGCGGCGATCGCCGACGTGCGGG TGACGGGCGGCCAGGTGAAGCTCGAGCGGATCGTGTGCGGGATCGACTGCGGCCGCGCGATCAATCCGCTGCTGATTCGC GAGATGGTCGAAGGCGGTGTCGGTTTCGCGCTGACCAATACGTTCAGGAGCGAGATCACGTTCGAGCACGGCGCGGTCGT GCAGCGCAATTTCGCCGACTATCCGCTGCTCGGTCTGGCCGCGATGCCGACGATCGACGCCGTGGTCGTCGACAGCGATC GTGATCCGCAAGGCTGCGGCGAAGTCGCGCTGCCGCCCGTCGCGCCGGCCATCGCCGATGCGATCTGGCGCGCGACCGGC GAACGGCCGCGCTCGATGCCGTTCGCCACGCCCCTCGCGACCTGA
Upstream 100 bases:
>100_bases CTGCTCGCGCGGCATCGCAAGCCGACCGACGCGCAGATCGACCAGGCCGTCACGAACCTGTGCCGCTGCGCGACCTATCA ACGCATTCGTGAGGCGATCC
Downstream 100 bases:
>100_bases GCGATCCCAGCGTTCCCCACAAGACCTGCCGCGCCCGGTGCGTCGCAGGTCGATATCAAGCATAACTACACGACTGGTCT GGAGACTTCCATGAAAACCT
Product: aldehyde oxidase and xanthine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 734; Mature: 733
Protein sequence:
>734_residues MSRPADAGRARHAPNASRRVFLKGGVALAGSLLLPLAIGDVVHAAGDGARFREINDWVRIDADGRTIIGLSQAEVGQGVY TGLPQVLADEMDADWRSVTVEFVTGRDAYRIDAANEAPQQFVGASMSATMFYTRLRIAGAQARSAFLRAGAARLGVRDTQ CVTRDGRVIHAPSGRSLSYGALVDAAAKLPPDPQPRLKPPSAHTLIGRSLHKLDVPAKVDGSAIFGIDVQVPDMLVGALT MAPTLNGRPTAVKNRDALRAMPGVVDVVIAKDAVIVVAPTYWQAKKACDAADIVWDAGTTPAFDSATILAQRKGALQAEH AVVATTIGEPARRLAEAGTIVEADYHTPYIVHATMEPVNATVHVRPGEIEVWGPIQGQDKVRWTLSALFNVPAERVIVNT TFLGGSFGRKYVPDFVVHAAVASKAVGRPVKVIRSREDDIRHGFYRPCASARLRAALGHDGLPVALHARVAGHSLYAAIK RDRYEQAGGWDETMLDGLYDLCYDVPNLLVDSVTVMQPIPVSFMRSVGSTSTVFFLESFVNELAHTVRADPVRYRRALLK HDPLALRVLDATAARANWFGRAPAGVSRGVAYSLYTGRGGAFRTYVAAIADVRVTGGQVKLERIVCGIDCGRAINPLLIR EMVEGGVGFALTNTFRSEITFEHGAVVQRNFADYPLLGLAAMPTIDAVVVDSDRDPQGCGEVALPPVAPAIADAIWRATG ERPRSMPFATPLAT
Sequences:
>Translated_734_residues MSRPADAGRARHAPNASRRVFLKGGVALAGSLLLPLAIGDVVHAAGDGARFREINDWVRIDADGRTIIGLSQAEVGQGVY TGLPQVLADEMDADWRSVTVEFVTGRDAYRIDAANEAPQQFVGASMSATMFYTRLRIAGAQARSAFLRAGAARLGVRDTQ CVTRDGRVIHAPSGRSLSYGALVDAAAKLPPDPQPRLKPPSAHTLIGRSLHKLDVPAKVDGSAIFGIDVQVPDMLVGALT MAPTLNGRPTAVKNRDALRAMPGVVDVVIAKDAVIVVAPTYWQAKKACDAADIVWDAGTTPAFDSATILAQRKGALQAEH AVVATTIGEPARRLAEAGTIVEADYHTPYIVHATMEPVNATVHVRPGEIEVWGPIQGQDKVRWTLSALFNVPAERVIVNT TFLGGSFGRKYVPDFVVHAAVASKAVGRPVKVIRSREDDIRHGFYRPCASARLRAALGHDGLPVALHARVAGHSLYAAIK RDRYEQAGGWDETMLDGLYDLCYDVPNLLVDSVTVMQPIPVSFMRSVGSTSTVFFLESFVNELAHTVRADPVRYRRALLK HDPLALRVLDATAARANWFGRAPAGVSRGVAYSLYTGRGGAFRTYVAAIADVRVTGGQVKLERIVCGIDCGRAINPLLIR EMVEGGVGFALTNTFRSEITFEHGAVVQRNFADYPLLGLAAMPTIDAVVVDSDRDPQGCGEVALPPVAPAIADAIWRATG ERPRSMPFATPLAT >Mature_733_residues SRPADAGRARHAPNASRRVFLKGGVALAGSLLLPLAIGDVVHAAGDGARFREINDWVRIDADGRTIIGLSQAEVGQGVYT GLPQVLADEMDADWRSVTVEFVTGRDAYRIDAANEAPQQFVGASMSATMFYTRLRIAGAQARSAFLRAGAARLGVRDTQC VTRDGRVIHAPSGRSLSYGALVDAAAKLPPDPQPRLKPPSAHTLIGRSLHKLDVPAKVDGSAIFGIDVQVPDMLVGALTM APTLNGRPTAVKNRDALRAMPGVVDVVIAKDAVIVVAPTYWQAKKACDAADIVWDAGTTPAFDSATILAQRKGALQAEHA VVATTIGEPARRLAEAGTIVEADYHTPYIVHATMEPVNATVHVRPGEIEVWGPIQGQDKVRWTLSALFNVPAERVIVNTT FLGGSFGRKYVPDFVVHAAVASKAVGRPVKVIRSREDDIRHGFYRPCASARLRAALGHDGLPVALHARVAGHSLYAAIKR DRYEQAGGWDETMLDGLYDLCYDVPNLLVDSVTVMQPIPVSFMRSVGSTSTVFFLESFVNELAHTVRADPVRYRRALLKH DPLALRVLDATAARANWFGRAPAGVSRGVAYSLYTGRGGAFRTYVAAIADVRVTGGQVKLERIVCGIDCGRAINPLLIRE MVEGGVGFALTNTFRSEITFEHGAVVQRNFADYPLLGLAAMPTIDAVVVDSDRDPQGCGEVALPPVAPAIADAIWRATGE RPRSMPFATPLAT
Specific function: Specific towards N-containing N-heterocyclic substrates, including isoquinoline, isoquinolin-5-ol, phthalazine and quinazoline [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR012368 - InterPro: IPR006311 [H]
Pfam domain/function: PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.3.99.16 [H]
Molecular weight: Translated: 78618; Mature: 78487
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRPADAGRARHAPNASRRVFLKGGVALAGSLLLPLAIGDVVHAAGDGARFREINDWVRI CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCEEEE DADGRTIIGLSQAEVGQGVYTGLPQVLADEMDADWRSVTVEFVTGRDAYRIDAANEAPQQ CCCCCEEEEECHHHHCCCHHHCCHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCHHH FVGASMSATMFYTRLRIAGAQARSAFLRAGAARLGVRDTQCVTRDGRVIHAPSGRSLSYG HHCCCHHHHHHHHHHHHHCHHHHHHHHHHCHHHCCCCCCCEECCCCEEEECCCCCCEECH ALVDAAAKLPPDPQPRLKPPSAHTLIGRSLHKLDVPAKVDGSAIFGIDVQVPDMLVGALT HHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCEECCCEEEEEECCCHHHHHHHHH MAPTLNGRPTAVKNRDALRAMPGVVDVVIAKDAVIVVAPTYWQAKKACDAADIVWDAGTT HCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCEEEEEECCHHHHHHCCCHHHEEECCCCC PAFDSATILAQRKGALQAEHAVVATTIGEPARRLAEAGTIVEADYHTPYIVHATMEPVNA CCCCCHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCEEEECCCCCEEEEEEECCCCE TVHVRPGEIEVWGPIQGQDKVRWTLSALFNVPAERVIVNTTFLGGSFGRKYVPDFVVHAA EEEEECCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH VASKAVGRPVKVIRSREDDIRHGFYRPCASARLRAALGHDGLPVALHARVAGHSLYAAIK HHHHHCCCCHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH RDRYEQAGGWDETMLDGLYDLCYDVPNLLVDSVTVMQPIPVSFMRSVGSTSTVFFLESFV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH NELAHTVRADPVRYRRALLKHDPLALRVLDATAARANWFGRAPAGVSRGVAYSLYTGRGG HHHHHHHCCCHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCEEEEEECCCC AFRTYVAAIADVRVTGGQVKLERIVCGIDCGRAINPLLIREMVEGGVGFALTNTFRSEIT HHHHHHHHHHHEEECCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHEE FEHGAVVQRNFADYPLLGLAAMPTIDAVVVDSDRDPQGCGEVALPPVAPAIADAIWRATG ECCCCEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC ERPRSMPFATPLAT CCCCCCCCCCCCCC >Mature Secondary Structure SRPADAGRARHAPNASRRVFLKGGVALAGSLLLPLAIGDVVHAAGDGARFREINDWVRI CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCEEEE DADGRTIIGLSQAEVGQGVYTGLPQVLADEMDADWRSVTVEFVTGRDAYRIDAANEAPQQ CCCCCEEEEECHHHHCCCHHHCCHHHHHHHCCCCCCEEEEEEEECCCEEEECCCCCCHHH FVGASMSATMFYTRLRIAGAQARSAFLRAGAARLGVRDTQCVTRDGRVIHAPSGRSLSYG HHCCCHHHHHHHHHHHHHCHHHHHHHHHHCHHHCCCCCCCEECCCCEEEECCCCCCEECH ALVDAAAKLPPDPQPRLKPPSAHTLIGRSLHKLDVPAKVDGSAIFGIDVQVPDMLVGALT HHHHHHHCCCCCCCCCCCCCCCHHHHHCHHHHCCCCCEECCCEEEEEECCCHHHHHHHHH MAPTLNGRPTAVKNRDALRAMPGVVDVVIAKDAVIVVAPTYWQAKKACDAADIVWDAGTT HCCCCCCCCCCCCCCHHHHHCCCCEEEEEECCEEEEEECCHHHHHHCCCHHHEEECCCCC PAFDSATILAQRKGALQAEHAVVATTIGEPARRLAEAGTIVEADYHTPYIVHATMEPVNA CCCCCHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCEEEECCCCCEEEEEEECCCCE TVHVRPGEIEVWGPIQGQDKVRWTLSALFNVPAERVIVNTTFLGGSFGRKYVPDFVVHAA EEEEECCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCHHHHHHHHHH VASKAVGRPVKVIRSREDDIRHGFYRPCASARLRAALGHDGLPVALHARVAGHSLYAAIK HHHHHCCCCHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHH RDRYEQAGGWDETMLDGLYDLCYDVPNLLVDSVTVMQPIPVSFMRSVGSTSTVFFLESFV HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHH NELAHTVRADPVRYRRALLKHDPLALRVLDATAARANWFGRAPAGVSRGVAYSLYTGRGG HHHHHHHCCCHHHHHHHHHCCCCEEEEEEEHHHHHHCCCCCCCCCCCCCCEEEEEECCCC AFRTYVAAIADVRVTGGQVKLERIVCGIDCGRAINPLLIREMVEGGVGFALTNTFRSEIT HHHHHHHHHHHEEECCCEEEEEEEEEECCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHEE FEHGAVVQRNFADYPLLGLAAMPTIDAVVVDSDRDPQGCGEVALPPVAPAIADAIWRATG ECCCCEEECCCCCCCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC ERPRSMPFATPLAT CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7782304; 8157655 [H]