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The map label for this gene is cph2 [H]

Identifier: 115351075

GI number: 115351075

Start: 1111581

End: 1113059

Strand: Direct

Name: cph2 [H]

Synonym: Bamb_1021

Alternate gene names: 115351075

Gene position: 1111581-1113059 (Clockwise)

Preceding gene: 115351074

Following gene: 115351080

Centisome position: 31.25

GC content: 63.69

Gene sequence:

>1479_bases
ATGCATCGTCGTACGGCGGCCCCCTACGTCATCGTGGCGGTTGGCATCGTGATCGCGTGCGCACTGATGGGCCTGTGCGT
GCTGCAGCTATTTCAGAGCCGGAACGACGCACTGGAGCGCGCAAGCGAAACCTCGCGCAATCTCGGCCTGATGGCTGAGC
GCGACATCGAGCGCAACTTCGAGCTCTACGACCTGTCGTTGCAGGCGGTAATCCATGGTCTGCAACGGCCCGATGTGATG
TCGGCAGCGCCGGCGCTGCGGCGCGGCGTGCTGTTCGATCATGCGATGAGTGCCCCCTTCATCGGTTCGCAACTGGTACT
CGACGCGAACGGCGATATCGTGCTGGATTCGTCCAACGACGTGCCCCGCAAGGGCAATTTCGCCGATCGCAAATACTTCA
CCGTGCATCGCGACAATCCCGACGTTGGGCTCTATGTGAGCGATCCGTTCGTGTCGCGCCTGCGCGCTGGCATGCTCTGC
ATTGTGCTGTCTCGGCGCATCTCGAACCCGGACGGATCGTTCGGCGGCGTCGCGCTGATTGCGATCAATCTCGAGTACTT
CCACCACCTGTTTGCGGGCCTGTCGCTGGGGCAGCACGGTTCGATGTCGCTGATCGGCAAGGACGGCATCATGGTGATGC
GTCAACCGTACAACGTCAGCATCGTCGGTCGCGATATCAGCAAGGCTACGACCTTTCGACGGTTTCAGCGTGCGTCGGAG
GGCGTATTCTCGGAAACGGCTTCAATCGACGGTGTACGTCGCCTCTACTATTTCAAACACCTGCCGAAGTTGCCGCTGAT
CATCATGGTTGCAGAGGGCGAGCAGGACGTTTATGCCGCGTGGCGGCACCGCGCAGTGACGATCGGCGCACTGGTGGCGA
CGTTCGGCGTCGCGTTCATCGCGCTGTCTTTCCTGCTCAGCGGGCAACTGCGCCGCCGGATGCGGGCCGAGTCGGAGCTG
GTGCTGCTGGCGCGTACCGACGGGCTCACCGGCCTGAACAATCGACGCAGTTTCGGGGAGGTGCTGGACCGGGAATGGCG
TCGCGCGAGGCGCACGCATTCCGTCTTCTCGCTGCTGTTCGTCGACGTCGATCGCTTCAAGGCTTACAACGACACCTACG
GGCATCAGGCCGGGGACGACGCGCTGGCGGCGGTCGCCCGTTGCATCGGCGAAAACATCCGCCGGCCGGTCGATACCGCG
GCGCGCTACGGCGGGGAGGAATTCGTCGTGCTGCTTCCCGATACGCCGCCGGCCGGCGCCGCACAGATCGCCGAGCGGAT
TCGCGCGGCAATCGACGAACTGGCACTCGAACATGCCGGCAGCGAGTATGGGCGCGTCACGGCCAGTATTGGCCTCGCCA
GCTGGACGCCGGAGCAGGACAATGAGCCCGACGCGGTAATCAAGGCGGCCGACGAGGCGCTGTACTATGCGAAAACGATC
GGCCGGAACAGGGTTGCCGCGTTGCAGCCGTTGGACTGA

Upstream 100 bases:

>100_bases
GGTCGGGTACGCGCCGAGTGTTCAAATGTACCCGTCCGATTTAGTATGCGGAAACCACGCGCCGAACGACGGGCGCGGCT
CATTTTGCGCTGAGGACACC

Downstream 100 bases:

>100_bases
CGAGGGATTGCCGGTTTGCCCTTCCACAAACGCGAAAGCCCGCTGAAGGCGGGCTTTTTTGCGTGCTGCAAATTTGCTAC
GGCAAGGGGCGGGAGTCTTG

Product: diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MHRRTAAPYVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLMAERDIERNFELYDLSLQAVIHGLQRPDVM
SAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSSNDVPRKGNFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLC
IVLSRRISNPDGSFGGVALIAINLEYFHHLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKATTFRRFQRASE
GVFSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIALSFLLSGQLRRRMRAESEL
VLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTA
ARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTI
GRNRVAALQPLD

Sequences:

>Translated_492_residues
MHRRTAAPYVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLMAERDIERNFELYDLSLQAVIHGLQRPDVM
SAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSSNDVPRKGNFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLC
IVLSRRISNPDGSFGGVALIAINLEYFHHLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKATTFRRFQRASE
GVFSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIALSFLLSGQLRRRMRAESEL
VLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTA
ARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTI
GRNRVAALQPLD
>Mature_492_residues
MHRRTAAPYVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLMAERDIERNFELYDLSLQAVIHGLQRPDVM
SAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSSNDVPRKGNFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLC
IVLSRRISNPDGSFGGVALIAINLEYFHHLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKATTFRRFQRASE
GVFSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIALSFLLSGQLRRRMRAESEL
VLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLFVDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTA
ARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTI
GRNRVAALQPLD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=39.7849462365591, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=41.5094339622642, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082007, Length=204, Percent_Identity=38.7254901960784, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI1787262, Length=168, Percent_Identity=40.4761904761905, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=32.4742268041237, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=38.3233532934132, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=36.5269461077844, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87081974, Length=189, Percent_Identity=32.8042328042328, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI87081977, Length=199, Percent_Identity=32.1608040201005, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787802, Length=202, Percent_Identity=31.1881188118812, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=210, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54263; Mature: 54263

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRRTAAPYVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLMAERDIERNF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCC
ELYDLSLQAVIHGLQRPDVMSAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSSND
EEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCC
VPRKGNFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLCIVLSRRISNPDGSFGGVALI
CCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
AINLEYFHHLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKATTFRRFQRASE
EEEHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHC
GVFSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFI
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALSFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLF
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCH
AQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTI
HHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GRNRVAALQPLD
CCCCCCCCCCCC
>Mature Secondary Structure
MHRRTAAPYVIVAVGIVIACALMGLCVLQLFQSRNDALERASETSRNLGLMAERDIERNF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHCCC
ELYDLSLQAVIHGLQRPDVMSAAPALRRGVLFDHAMSAPFIGSQLVLDANGDIVLDSSND
EEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEECCCC
VPRKGNFADRKYFTVHRDNPDVGLYVSDPFVSRLRAGMLCIVLSRRISNPDGSFGGVALI
CCCCCCCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
AINLEYFHHLFAGLSLGQHGSMSLIGKDGIMVMRQPYNVSIVGRDISKATTFRRFQRASE
EEEHHHHHHHHHHCCCCCCCCEEEEECCCEEEEECCCEEEEEECCHHHHHHHHHHHHHHC
GVFSETASIDGVRRLYYFKHLPKLPLIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFI
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
ALSFLLSGQLRRRMRAESELVLLARTDGLTGLNNRRSFGEVLDREWRRARRTHSVFSLLF
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VDVDRFKAYNDTYGHQAGDDALAAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGA
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEECCCCCCCH
AQIAERIRAAIDELALEHAGSEYGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTI
HHHHHHHHHHHHHHHHHHCCCHHCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GRNRVAALQPLD
CCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]