| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115351023
Identifier: 115351023
GI number: 115351023
Start: 1060260
End: 1060670
Strand: Direct
Name: 115351023
Synonym: Bamb_0969
Alternate gene names: NA
Gene position: 1060260-1060670 (Clockwise)
Preceding gene: 115351019
Following gene: 115351030
Centisome position: 29.81
GC content: 70.56
Gene sequence:
>411_bases ATGTCCAAGATTCGTACGATGCTGATCGGTGCCGCGCTGACGGCGTTCGCAACTTCGGCCGCATTCGCGCAGACGGGCGT CGCAACGCAGGGTACCGCAGGCGCCGGCGTGCAGACGCAGACCCCTGCAGCAGGGGCCGGCGCCGGCGCGGGCATGCAGG GTGGTGCCGGCATGAATGCGTCGGGCAGCGCGGTCGGTGGTGCGACCGATGCGGTCGGTGCGGCAGCCGACGGCGCGAAG GATACGGCGGCGTCGTCGGTCCATTCGACCAAGAAGCACGCGAAGCATGCGACGAAGTCGGCCAAGCACCAGGCCCGCTC GACGAAGTCGAAGGTCGGCGACGAGGCGGTCGAAGGCGGCGCGTCGACGGGTGTGCAGGGCGGTGCATCGGCCGCGGGCG GCACGCAGTAA
Upstream 100 bases:
>100_bases GCGCGCGGGTCTTCTGTCGTACCTGCTGCGTGTTGCGGCAGGGGACGCGACGGAGCGTATCGATGCGCTCCGCGCCCACA ACTTCTCGAGGAGGATAGTC
Downstream 100 bases:
>100_bases GCGGCGCCCGCCCGTCACGATGTTCGCGCCGGACGGCGCGTCGTGACGGCGATCGAACGGCGGCCCGGTTCGCTTCGCGC GAACCGGGCCGTTCTTCATG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSKIRTMLIGAALTAFATSAAFAQTGVATQGTAGAGVQTQTPAAGAGAGAGMQGGAGMNASGSAVGGATDAVGAAADGAK DTAASSVHSTKKHAKHATKSAKHQARSTKSKVGDEAVEGGASTGVQGGASAAGGTQ
Sequences:
>Translated_136_residues MSKIRTMLIGAALTAFATSAAFAQTGVATQGTAGAGVQTQTPAAGAGAGAGMQGGAGMNASGSAVGGATDAVGAAADGAK DTAASSVHSTKKHAKHATKSAKHQARSTKSKVGDEAVEGGASTGVQGGASAAGGTQ >Mature_135_residues SKIRTMLIGAALTAFATSAAFAQTGVATQGTAGAGVQTQTPAAGAGAGAGMQGGAGMNASGSAVGGATDAVGAAADGAKD TAASSVHSTKKHAKHATKSAKHQARSTKSKVGDEAVEGGASTGVQGGASAAGGTQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12528; Mature: 12397
Theoretical pI: Translated: 10.70; Mature: 10.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIRTMLIGAALTAFATSAAFAQTGVATQGTAGAGVQTQTPAAGAGAGAGMQGGAGMNA CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGSAVGGATDAVGAAADGAKDTAASSVHSTKKHAKHATKSAKHQARSTKSKVGDEAVEGG CCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ASTGVQGGASAAGGTQ CCCCCCCCCCCCCCCC >Mature Secondary Structure SKIRTMLIGAALTAFATSAAFAQTGVATQGTAGAGVQTQTPAAGAGAGAGMQGGAGMNA CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC SGSAVGGATDAVGAAADGAKDTAASSVHSTKKHAKHATKSAKHQARSTKSKVGDEAVEGG CCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ASTGVQGGASAAGGTQ CCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA