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The map label for this gene is nudL [H]

Identifier: 115351003

GI number: 115351003

Start: 1040144

End: 1040830

Strand: Direct

Name: nudL [H]

Synonym: Bamb_0949

Alternate gene names: 115351003

Gene position: 1040144-1040830 (Clockwise)

Preceding gene: 115351002

Following gene: 115351004

Centisome position: 29.25

GC content: 67.1

Gene sequence:

>687_bases
TTGAATCGCCGCCCCATCGTTGATCCCGAAGTGCTGCCGGTCGAAGGCACCGGCGCCGGCCTGCCGTCCATCGATGCACG
CCTGCTGACGCCGCCCGGGCTGCGCGAACGTTTCGCACGCACGCTCGAATGGAACGTCGAGCCCGGCGAGGCTCGCCTGG
TGGAAGGCGTCGATCCGCGCAGTGCCGCCGTCCTCATCCCGCTCGTGGTGCGCGAGAGCGGCCTCACGGTGCTGCTGACC
CAGCGCGCCGATCACCTGAACGACCATGCCGGGCAGATCAGCTTCCCCGGCGGCCGTCGCGAGTCGTACGATCGCGATGC
GACGGCGACCGCGTTGCGCGAGGCGAAGGAAGAAATCGGACTGACGGCCGAACGGGTGGAGATTCTCGGCGCGCTGCCCG
ACTACCTGACGGGCACCGGCTTCTGCGTGACGCCGGTCGTCGGGCTCGTGCATCCGCCGTTCACCGTGCAGGCCGATGCG
TTCGAAGTCGCCGAGATTTTCGAGGTGCCGCTCGCGTTCCTGATGAGTCCCGCGAATCACCAGGTGCGCGTGTTCCGCTG
GGAAGGCGGCGAGCGTCGTTTTTTTGCGATGCCCTATCCGAATGGCGAGTCGGCGGGGCATTACTTCATCTGGGGCGCAA
CTGCCGGCATGTTGCGCAATCTGTACCGCTTCTTGGCAGCCGGCTAG

Upstream 100 bases:

>100_bases
CTTCCCAAGAGTAAGAGCTGTAAGGAAAAAGCACCCTCCCGGGTGCTTTTTTCATTCTGGCGCGACAATATGCTCGATAC
GTCACGAACCGAGAGTCCCA

Downstream 100 bases:

>100_bases
CATCCCGCCCGAGCGTGCCCACGCGGCCGGCTCGCGGGCCGTCGCGCCAGCAGCCATCCGTCGCTTACGCTGTGCTATCG
TTATGCAAAAAATGACATAA

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MNRRPIVDPEVLPVEGTGAGLPSIDARLLTPPGLRERFARTLEWNVEPGEARLVEGVDPRSAAVLIPLVVRESGLTVLLT
QRADHLNDHAGQISFPGGRRESYDRDATATALREAKEEIGLTAERVEILGALPDYLTGTGFCVTPVVGLVHPPFTVQADA
FEVAEIFEVPLAFLMSPANHQVRVFRWEGGERRFFAMPYPNGESAGHYFIWGATAGMLRNLYRFLAAG

Sequences:

>Translated_228_residues
MNRRPIVDPEVLPVEGTGAGLPSIDARLLTPPGLRERFARTLEWNVEPGEARLVEGVDPRSAAVLIPLVVRESGLTVLLT
QRADHLNDHAGQISFPGGRRESYDRDATATALREAKEEIGLTAERVEILGALPDYLTGTGFCVTPVVGLVHPPFTVQADA
FEVAEIFEVPLAFLMSPANHQVRVFRWEGGERRFFAMPYPNGESAGHYFIWGATAGMLRNLYRFLAAG
>Mature_228_residues
MNRRPIVDPEVLPVEGTGAGLPSIDARLLTPPGLRERFARTLEWNVEPGEARLVEGVDPRSAAVLIPLVVRESGLTVLLT
QRADHLNDHAGQISFPGGRRESYDRDATATALREAKEEIGLTAERVEILGALPDYLTGTGFCVTPVVGLVHPPFTVQADA
FEVAEIFEVPLAFLMSPANHQVRVFRWEGGERRFFAMPYPNGESAGHYFIWGATAGMLRNLYRFLAAG

Specific function: Probably mediates the hydrolysis of some nucleoside diphosphate derivatives [H]

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI157785656, Length=155, Percent_Identity=38.7096774193548, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1788115, Length=169, Percent_Identity=43.1952662721894, Blast_Score=99, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17536993, Length=178, Percent_Identity=31.4606741573034, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI18859683, Length=171, Percent_Identity=37.4269005847953, Blast_Score=87, Evalue=7e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR000059 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: NA

Molecular weight: Translated: 25004; Mature: 25004

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRRPIVDPEVLPVEGTGAGLPSIDARLLTPPGLRERFARTLEWNVEPGEARLVEGVDPR
CCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCC
SAAVLIPLVVRESGLTVLLTQRADHLNDHAGQISFPGGRRESYDRDATATALREAKEEIG
CCEEEEEEEECCCCCEEEEECCCHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC
LTAERVEILGALPDYLTGTGFCVTPVVGLVHPPFTVQADAFEVAEIFEVPLAFLMSPANH
CCHHHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCC
QVRVFRWEGGERRFFAMPYPNGESAGHYFIWGATAGMLRNLYRFLAAG
CEEEEEEECCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRRPIVDPEVLPVEGTGAGLPSIDARLLTPPGLRERFARTLEWNVEPGEARLVEGVDPR
CCCCCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCEEEECCCCCC
SAAVLIPLVVRESGLTVLLTQRADHLNDHAGQISFPGGRRESYDRDATATALREAKEEIG
CCEEEEEEEECCCCCEEEEECCCHHCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHC
LTAERVEILGALPDYLTGTGFCVTPVVGLVHPPFTVQADAFEVAEIFEVPLAFLMSPANH
CCHHHHHHHHCCHHHHCCCCHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHCCCCCC
QVRVFRWEGGERRFFAMPYPNGESAGHYFIWGATAGMLRNLYRFLAAG
CEEEEEEECCCEEEEEECCCCCCCCCEEEEECCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA