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The map label for this gene is rarA [H]

Identifier: 115350891

GI number: 115350891

Start: 924732

End: 926042

Strand: Direct

Name: rarA [H]

Synonym: Bamb_0837

Alternate gene names: 115350891

Gene position: 924732-926042 (Clockwise)

Preceding gene: 115350890

Following gene: 115350893

Centisome position: 26.0

GC content: 66.82

Gene sequence:

>1311_bases
ATGTCCGACCTGTTTCAAGTCGAGCCGCGCCGGCCGCTCGCCGAGGCGCTGCGGCCCAAGACGCTCGCCGAGGTGATCGG
CCAGACGCATCTGCTGGGCGAAGGCAAGCCGCTGCGGCTCGCGTTCGAATCCGGCAAGCCGCATTCGATGATCCTGTGGG
GGCCGCCCGGCGTCGGCAAGACGACGCTCGCGCGCCTCACCGCGCTCGCGTTCGACTGCGAGTTCATCGCGCTGTCCGCG
GTGCTCGGCGGCGTGAAGGACATTCGCGAGTCGATGGAGCAGGCGAAGGACACGCTGAACCGCACCGGCCGCCACACGAT
CCTGTTCGTCGACGAAATCCACCGCTTCAACAAGGGGCAGCAGGATGCGCTGCTGCCGTTCGTCGAGTCGGGGCTCGTGA
CGTTCATCGGCGCGACGACCGAGAATCCGAGCTTCGAAGTCAACTCGGCGCTGCTGTCGCGCGCGCAGGTGTACGTGCTG
CAGTCGCTGAGCGACGACGAGATGCGTCAGTTGCTCAAGCGTGCGCAGGAAATCGCGCTCGACGGCCTCGCGTTCGACGA
CAAGGCGGTCGATACGCTCATCGGTTACGCGGACGGCGACGCGCGGCGCTTCCTGAACCTGCTCGAGCAGGCGCAGACGG
CTGCTGCTTCCTCCCGAATCACGACCATCGATGCCGATTTCGTCAGCAGCGCGATGACGCTGAACGCGCGGCGCTTCGAC
AAGGGCGGTGACAATTTCTACGATCAGATCTCGGCGCTGCACAAGTCGGTGCGGGGTTCGAGCCCGGACGGCGCGCTGTA
CTGGTTCTGCCGGATGATCGACGGCGGCGCGGATCCGAAATATCTCGCGCGCCGCATCGTGCGGATGGCGTGGGAAGACA
TCGGTCTGGCCGACCCGCGCGCGCTGCAGGTGGCGAACGACGCGGCCGAGACCTACGAGCGGCTCGGTTCCCCCGAAGGC
GAGCTGGCGCTCGGGCAAGCGGTGATCTACCTCGCGTGCGCGGCGAAGAGCAACGCGGGCTACAACGCGTTCAACCAGGC
GATGGCGTTCGTCAAGCAGGACAAGTCGCGCGAGGTGCCCGTGCATCTGCGCAATGCGCCGACCAAGCTGATGAAGGAAC
TCGGCTACGGTCATGCGTATCGCTACGCGCACGACGAGCCGAACGCCTATGCGGCCGGCGAGACCTATCTGCCGGAAGGC
ATGCGCGAGCCGCGCTGGTACAAGCCGGTGCCGCGCGGGCTCGAAGCGAAGATCGCCGACAAGCTCGCGTGGCTGCGCGA
GCTCGACCGCGAGGCCGGCAAGAAGGACTGA

Upstream 100 bases:

>100_bases
GCGCCCGACCCCCGCCCCCGGCGGCGCAGTCGCGCGGCTGTCATAATATTGGGTCCGGCGGCCCGTTCGGCCGCCATTGT
CTGATCTGGAGCGAGGGTTC

Downstream 100 bases:

>100_bases
CCGGCCGCACGCGGTGGCGCGCGCTGCGCCCGGTGCGTCAGCGCTTGCGGCCCGGCTGCTTCTTCCAGTACTCGAACGGC
TCCGCGTGGCATTCGATGTC

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 435

Protein sequence:

>436_residues
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
QSLSDDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQVANDAAETYERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPEG
MREPRWYKPVPRGLEAKIADKLAWLRELDREAGKKD

Sequences:

>Translated_436_residues
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSA
VLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVL
QSLSDDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMTLNARRFD
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQVANDAAETYERLGSPEG
ELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPEG
MREPRWYKPVPRGLEAKIADKLAWLRELDREAGKKD
>Mature_435_residues
SDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGKTTLARLTALAFDCEFIALSAV
LGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQQDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQ
SLSDDEMRQLLKRAQEIALDGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMTLNARRFDK
GGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPRALQVANDAAETYERLGSPEGE
LALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVPVHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPEGM
REPRWYKPVPRGLEAKIADKLAWLRELDREAGKKD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=43.3106575963719, Blast_Score=322, Evalue=5e-88,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=39.4557823129252, Blast_Score=270, Evalue=2e-72,
Organism=Escherichia coli, GI1787119, Length=447, Percent_Identity=53.4675615212528, Blast_Score=456, Evalue=1e-130,
Organism=Escherichia coli, GI1786676, Length=250, Percent_Identity=29.6, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17541988, Length=213, Percent_Identity=30.9859154929577, Blast_Score=67, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6324111, Length=431, Percent_Identity=41.0672853828306, Blast_Score=291, Evalue=1e-79,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48195; Mature: 48064

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCCHHHHHCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLSDDEMRQLLKRAQEIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
ALQVANDAAETYERLGSPEGELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPEGMREPRWYKPVPRGLEAKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
KLAWLRELDREAGKKD
HHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SDLFQVEPRRPLAEALRPKTLAEVIGQTHLLGEGKPLRLAFESGKPHSMILWGPPGVGK
CCCCCCCCCCCHHHHHCHHHHHHHHCCHHCCCCCCCEEEEEECCCCCEEEEECCCCCCH
TTLARLTALAFDCEFIALSAVLGGVKDIRESMEQAKDTLNRTGRHTILFVDEIHRFNKGQ
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCC
QDALLPFVESGLVTFIGATTENPSFEVNSALLSRAQVYVLQSLSDDEMRQLLKRAQEIAL
CHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
DGLAFDDKAVDTLIGYADGDARRFLNLLEQAQTAAASSRITTIDADFVSSAMTLNARRFD
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHCC
KGGDNFYDQISALHKSVRGSSPDGALYWFCRMIDGGADPKYLARRIVRMAWEDIGLADPR
CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCH
ALQVANDAAETYERLGSPEGELALGQAVIYLACAAKSNAGYNAFNQAMAFVKQDKSREVP
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCC
VHLRNAPTKLMKELGYGHAYRYAHDEPNAYAAGETYLPEGMREPRWYKPVPRGLEAKIAD
EEECCCHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHH
KLAWLRELDREAGKKD
HHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]