| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350847
Identifier: 115350847
GI number: 115350847
Start: 880891
End: 881484
Strand: Direct
Name: 115350847
Synonym: Bamb_0793
Alternate gene names: NA
Gene position: 880891-881484 (Clockwise)
Preceding gene: 115350846
Following gene: 115350848
Centisome position: 24.77
GC content: 65.66
Gene sequence:
>594_bases ATGACCGCATCTTGCACGCCCGGCCGGCGCCGTTTCCTCGCCGTGTGCGCCGGCGCCATCGGCGTGTCGGTATCGCTCGC GGTATCGCTCGCCGCCTGCGCGTCGACGTTCCCGTTCATCCCCGATCACTACACGTTCTCGCGCGGCGACGTGCAGAAAG CCGTCGCGCGCAAGTTCCCGTACCAGAAGACGGTCGCGCAGGTCGTCGACGTGTCGCTTGCGAATCCGGCCGTCAACCTG CTGCCCGACCAGAACCGCGTCGCCGTGCAGCTCGACGCGCATTTCGCGAGTCCGTTCCTGAGCGAGCCGGTGAGCGGCAA GTTCACCGTGTCGGGCCAGCTGGCGTACGACGCGCCGAGCCGCTCCGTCGTGTTGCGGGCGCCGGCCGTCGACAGCCTCG TGCTCGACGGCAACGCGCAGATGTACGCACAACAGGTCGGCGCGGCCGCCGGCCTGCTCGCGACGCAGGTGCTGACCAAC TATCCGATCTACACGTTCAAGCCCGAGCAACTGCAATTTGCCGGAGTGAACTACGAACCCGGTACAATTACGATTCTTAC AAACGGCATACGCGTGGCGATCGTCGAAAAGTGA
Upstream 100 bases:
>100_bases GCGGCGTGTGCGCAAGCACTAACTTCGGTCCACGGCCCCGAAGCGGCGGCCGAGCCGATGGCCCCACTGCCGCTTCGCCC GATACAGGAGATTGTCCAGC
Downstream 100 bases:
>100_bases CGACGTACCGCGCGCGGCCGGGCGGGCCGCGGCGGTGACGGGGCCCATTCTCTTTCGACTACTTCGGAGTTGGGCCACGG ATGGACTGGATCCTGATCTG
Product: hypothetical protein
Products: NA
Alternate protein names: Transmembrane Lipoprotein
Number of amino acids: Translated: 197; Mature: 196
Protein sequence:
>197_residues MTASCTPGRRRFLAVCAGAIGVSVSLAVSLAACASTFPFIPDHYTFSRGDVQKAVARKFPYQKTVAQVVDVSLANPAVNL LPDQNRVAVQLDAHFASPFLSEPVSGKFTVSGQLAYDAPSRSVVLRAPAVDSLVLDGNAQMYAQQVGAAAGLLATQVLTN YPIYTFKPEQLQFAGVNYEPGTITILTNGIRVAIVEK
Sequences:
>Translated_197_residues MTASCTPGRRRFLAVCAGAIGVSVSLAVSLAACASTFPFIPDHYTFSRGDVQKAVARKFPYQKTVAQVVDVSLANPAVNL LPDQNRVAVQLDAHFASPFLSEPVSGKFTVSGQLAYDAPSRSVVLRAPAVDSLVLDGNAQMYAQQVGAAAGLLATQVLTN YPIYTFKPEQLQFAGVNYEPGTITILTNGIRVAIVEK >Mature_196_residues TASCTPGRRRFLAVCAGAIGVSVSLAVSLAACASTFPFIPDHYTFSRGDVQKAVARKFPYQKTVAQVVDVSLANPAVNLL PDQNRVAVQLDAHFASPFLSEPVSGKFTVSGQLAYDAPSRSVVLRAPAVDSLVLDGNAQMYAQQVGAAAGLLATQVLTNY PIYTFKPEQLQFAGVNYEPGTITILTNGIRVAIVEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20891; Mature: 20760
Theoretical pI: Translated: 8.80; Mature: 8.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTASCTPGRRRFLAVCAGAIGVSVSLAVSLAACASTFPFIPDHYTFSRGDVQKAVARKFP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCC YQKTVAQVVDVSLANPAVNLLPDQNRVAVQLDAHFASPFLSEPVSGKFTVSGQLAYDAPS HHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCCCHHHCCCCCCEEEEEEEEEECCCC RSVVLRAPAVDSLVLDGNAQMYAQQVGAAAGLLATQVLTNYPIYTFKPEQLQFAGVNYEP CEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCC GTITILTNGIRVAIVEK CEEEEEECCEEEEEEEC >Mature Secondary Structure TASCTPGRRRFLAVCAGAIGVSVSLAVSLAACASTFPFIPDHYTFSRGDVQKAVARKFP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHCC YQKTVAQVVDVSLANPAVNLLPDQNRVAVQLDAHFASPFLSEPVSGKFTVSGQLAYDAPS HHHHHHHHHHHHCCCCEEEECCCCCCEEEEEECCCCCHHHCCCCCCEEEEEEEEEECCCC RSVVLRAPAVDSLVLDGNAQMYAQQVGAAAGLLATQVLTNYPIYTFKPEQLQFAGVNYEP CEEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEEECCCCCC GTITILTNGIRVAIVEK CEEEEEECCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA