Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

Click here to switch to the map view.

The map label for this gene is 115350810

Identifier: 115350810

GI number: 115350810

Start: 838208

End: 838456

Strand: Direct

Name: 115350810

Synonym: Bamb_0756

Alternate gene names: NA

Gene position: 838208-838456 (Clockwise)

Preceding gene: 115350809

Following gene: 115350811

Centisome position: 23.57

GC content: 60.24

Gene sequence:

>249_bases
ATGATCAGCTCGCGGGGCGGGCGTGCCCGGTGGTGTGATGCCGACAACGGCTCCGCATACAGCATCCACCTGTATGCAGG
CATGTTGCCGCGGACGAAGCGCATCAAAATTGCCGGCCGCGCCCGAAGCGCGTTTTTCGACAACGTCGATCTGATCAAGA
AGCTGAGATTCACCCGGCCCCGCTTGCCGGTGATGGATAATTTCGTCAGTGTGGCCTGGCTGCAGACGATGGTGAGGAGT
TTGCCGTAG

Upstream 100 bases:

>100_bases
TCGCTTCCAGGACGTGTACGGACGGGCTTGAGCCGGGAATGATGACAGCCCGGTGCGTTGCCGGGCTTCATGGCGCGGCT
GGGGGTGTTTTTGACCGACG

Downstream 100 bases:

>100_bases
TGGATAGCTTTTATCGCGCGTTTGAAGATCAGCATCGAGGCTCAAGGGAACTGATCAAAAGTCGGCTGGCGAAATACCAG
CCGTTCATTGCGCCCCTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 82; Mature: 82

Protein sequence:

>82_residues
MISSRGGRARWCDADNGSAYSIHLYAGMLPRTKRIKIAGRARSAFFDNVDLIKKLRFTRPRLPVMDNFVSVAWLQTMVRS
LP

Sequences:

>Translated_82_residues
MISSRGGRARWCDADNGSAYSIHLYAGMLPRTKRIKIAGRARSAFFDNVDLIKKLRFTRPRLPVMDNFVSVAWLQTMVRS
LP
>Mature_82_residues
MISSRGGRARWCDADNGSAYSIHLYAGMLPRTKRIKIAGRARSAFFDNVDLIKKLRFTRPRLPVMDNFVSVAWLQTMVRS
LP

Specific function: Unknown

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9356; Mature: 9356

Theoretical pI: Translated: 11.92; Mature: 11.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSRGGRARWCDADNGSAYSIHLYAGMLPRTKRIKIAGRARSAFFDNVDLIKKLRFTRP
CCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHCCHHHHHHHHCCCC
RLPVMDNFVSVAWLQTMVRSLP
CCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MISSRGGRARWCDADNGSAYSIHLYAGMLPRTKRIKIAGRARSAFFDNVDLIKKLRFTRP
CCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEECCCCHHHHCCHHHHHHHHCCCC
RLPVMDNFVSVAWLQTMVRSLP
CCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA