| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350803
Identifier: 115350803
GI number: 115350803
Start: 829174
End: 831021
Strand: Direct
Name: 115350803
Synonym: Bamb_0749
Alternate gene names: NA
Gene position: 829174-831021 (Clockwise)
Preceding gene: 115350802
Following gene: 115350804
Centisome position: 23.31
GC content: 53.35
Gene sequence:
>1848_bases GTGCTTAACGAGAACTTCGATTTTGCGCTCTTCATGAGCCGGCACTTGGAAGACGTGGCTCGGAAATCGGGCGTCGAGAT AGGCGTGGGTACACTGCCACTCGCCTTGGATATTGAAGGACTGTTGAGCCGCCCCTATAGGGCTTCGTCGGATGGTAAGG TTAGATTCTGTTCGATTGCAGCATTTCATGCACGTAAAGGTGTTGAGGCGCTTGTCGAGGGGTTCATTCGTGCTTTCGGT GATCGACAGGACGTGGAGCTCACGATACATTCAAATCTGGCGATCGGCTCAAGTTTTGAGCGCGTCAAGAAACTGGTCGA CTCTAGAAAGGCAACGAATATTGTCATCAGTTGTGCCGCCCTGACTGATCAAGAGAAAAATTCGCTGATCGAGGAATGTG ATGTTTTCGTGAATTGCTCCCGCGGTGAAGGATATTCTATCGGGCCGCGAGAAGCCCTGGCATTGGGGAAAGTACTTGCA ATAACAGCTGTTGGTGGTCATAACGATCTGATTTCGACGCCCGGCGTTTTTGCTATACCGGCTACTATTGCGATGCCGGC ACGCTACCCCGAAATCGATAATCTCGTCGTCGGCCGGCAATTTGCCGCGGACATCGACGACGTCAGCAAGGCACTCACGG ACGCGTTTGAATACATTTCGTCCGGCATAAGCGCGACGACGGTACGTGCGCGGCGCCAACTCGCCGCCGAGTTCAGTTTT ACTGGACTCGAGCTGAATTACGGTGAGTTGATCGATACCAAGCTTCGGTCATTTCGGCCCCGGCAATGCGGTTCACGCTT TACCAGATTGCCGGCCGAGTTGCCAGCGACCGTAGAGCGGCTTCTGGGACATCGTTCTGCATCACTGCCTGGTGTTGATC GTACCGTTGTGCAGTCTCATGACGGGGGCTTCTTCTCGGTATTCAACTCATTCATGAGTCATTTGGTGTGGGACCAGCGT GACAAGCGGTGTCACATGGTCTTGCCAGACTGGAACGTGGATCGCATGATCAAGCGCCTAGGTACGGCTCAATTCATGAG CTTTTGCTATGGGCGCCCGAACGAGGGAAATGTCTGGTCCAAGCTGTTCGAGCCGCTCTACGGCCTCAGCGACGCAGATA TGGACGACGAGGGCTTCCTGTACGCAAAGGGGCGTCCTCCTGTCGCGGTGTTCAATCATGAACGTGAGCCGCAACTTACT TATGTCCACGCGTATAAATTGTATAAGAGCGGTCAATTTTCTCGCATTCGCTCGCAATACAACAAGGTGTTCAGGGATCA TGTGCGCTTGCGCCCTCGATACCAGCGCGAATTGGATGAATTCCGGGCGAACTTCGCCGGGAAGTTTATGATTGCGGCGC ACGTCAAGCATCCGAGTCACGTGATCGAGCAGCCGAACGGAAAAATCGCACACATCCAATCGTATATAGACGGGATTAAG CGCCAGCTCGAGGTTCGCGGATTAAAAAGGGATTCGCCGGACTGGGCGGTATTTCTTGCGACGGATCAGGATCGAGTAAT CAATGTCTTCAGGGAAGAATTTGGCGACAAGATCTTTTGCTACGAGGATGTCCGCCGAACGACCGAGGCTGAAGATGCGC GCTACGACCAGTTGGGGCCAGAGGAGCGCCGTGCAGAAGGTTTTCAGGTGCAACACTTGGTCGCTGCAAATCCGGATAAC TGGAACATTAGGATGGCTTGGGAAGTGATTCGCGATGCGATGACTATGGCGCATTGCAATGTGCTTCTCCACATTGTCAG CAACGTTTCGACAGCAGTGTCGTACATGAATCCGGACATCGAACTGGTTTTTTGTTCCGCCGAAGAGGGTGAGTCCGCAC GTCACTGA
Upstream 100 bases:
>100_bases CGGTGCATATGACTTGAATTACACCCTGGTTCCGCCTGGTGCATTGCGATTTGCTCATATCGCTTACGACTCCGATGAGC TACCGTCTCAATGGGTCAAA
Downstream 100 bases:
>100_bases ATGCTAGCTTTGCGTTTGGCGCCGAGCGGCATGCGGAGCGTGGAGCGCTCGCCGGGCTTAGTCGCTGCGCCTGATGGAAA ACAAGTGGAGTCGACAAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 615; Mature: 615
Protein sequence:
>615_residues MLNENFDFALFMSRHLEDVARKSGVEIGVGTLPLALDIEGLLSRPYRASSDGKVRFCSIAAFHARKGVEALVEGFIRAFG DRQDVELTIHSNLAIGSSFERVKKLVDSRKATNIVISCAALTDQEKNSLIEECDVFVNCSRGEGYSIGPREALALGKVLA ITAVGGHNDLISTPGVFAIPATIAMPARYPEIDNLVVGRQFAADIDDVSKALTDAFEYISSGISATTVRARRQLAAEFSF TGLELNYGELIDTKLRSFRPRQCGSRFTRLPAELPATVERLLGHRSASLPGVDRTVVQSHDGGFFSVFNSFMSHLVWDQR DKRCHMVLPDWNVDRMIKRLGTAQFMSFCYGRPNEGNVWSKLFEPLYGLSDADMDDEGFLYAKGRPPVAVFNHEREPQLT YVHAYKLYKSGQFSRIRSQYNKVFRDHVRLRPRYQRELDEFRANFAGKFMIAAHVKHPSHVIEQPNGKIAHIQSYIDGIK RQLEVRGLKRDSPDWAVFLATDQDRVINVFREEFGDKIFCYEDVRRTTEAEDARYDQLGPEERRAEGFQVQHLVAANPDN WNIRMAWEVIRDAMTMAHCNVLLHIVSNVSTAVSYMNPDIELVFCSAEEGESARH
Sequences:
>Translated_615_residues MLNENFDFALFMSRHLEDVARKSGVEIGVGTLPLALDIEGLLSRPYRASSDGKVRFCSIAAFHARKGVEALVEGFIRAFG DRQDVELTIHSNLAIGSSFERVKKLVDSRKATNIVISCAALTDQEKNSLIEECDVFVNCSRGEGYSIGPREALALGKVLA ITAVGGHNDLISTPGVFAIPATIAMPARYPEIDNLVVGRQFAADIDDVSKALTDAFEYISSGISATTVRARRQLAAEFSF TGLELNYGELIDTKLRSFRPRQCGSRFTRLPAELPATVERLLGHRSASLPGVDRTVVQSHDGGFFSVFNSFMSHLVWDQR DKRCHMVLPDWNVDRMIKRLGTAQFMSFCYGRPNEGNVWSKLFEPLYGLSDADMDDEGFLYAKGRPPVAVFNHEREPQLT YVHAYKLYKSGQFSRIRSQYNKVFRDHVRLRPRYQRELDEFRANFAGKFMIAAHVKHPSHVIEQPNGKIAHIQSYIDGIK RQLEVRGLKRDSPDWAVFLATDQDRVINVFREEFGDKIFCYEDVRRTTEAEDARYDQLGPEERRAEGFQVQHLVAANPDN WNIRMAWEVIRDAMTMAHCNVLLHIVSNVSTAVSYMNPDIELVFCSAEEGESARH >Mature_615_residues MLNENFDFALFMSRHLEDVARKSGVEIGVGTLPLALDIEGLLSRPYRASSDGKVRFCSIAAFHARKGVEALVEGFIRAFG DRQDVELTIHSNLAIGSSFERVKKLVDSRKATNIVISCAALTDQEKNSLIEECDVFVNCSRGEGYSIGPREALALGKVLA ITAVGGHNDLISTPGVFAIPATIAMPARYPEIDNLVVGRQFAADIDDVSKALTDAFEYISSGISATTVRARRQLAAEFSF TGLELNYGELIDTKLRSFRPRQCGSRFTRLPAELPATVERLLGHRSASLPGVDRTVVQSHDGGFFSVFNSFMSHLVWDQR DKRCHMVLPDWNVDRMIKRLGTAQFMSFCYGRPNEGNVWSKLFEPLYGLSDADMDDEGFLYAKGRPPVAVFNHEREPQLT YVHAYKLYKSGQFSRIRSQYNKVFRDHVRLRPRYQRELDEFRANFAGKFMIAAHVKHPSHVIEQPNGKIAHIQSYIDGIK RQLEVRGLKRDSPDWAVFLATDQDRVINVFREEFGDKIFCYEDVRRTTEAEDARYDQLGPEERRAEGFQVQHLVAANPDN WNIRMAWEVIRDAMTMAHCNVLLHIVSNVSTAVSYMNPDIELVFCSAEEGESARH
Specific function: Unknown
COG id: COG0438
COG function: function code M; Glycosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69418; Mature: 69418
Theoretical pI: Translated: 6.82; Mature: 6.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLNENFDFALFMSRHLEDVARKSGVEIGVGTLPLALDIEGLLSRPYRASSDGKVRFCSIA CCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHHCCCCCCCCCCCEEEEEEE AFHARKGVEALVEGFIRAFGDRQDVELTIHSNLAIGSSFERVKKLVDSRKATNIVISCAA HHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEEH LTDQEKNSLIEECDVFVNCSRGEGYSIGPREALALGKVLAITAVGGHNDLISTPGVFAIP HCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEC ATIAMPARYPEIDNLVVGRQFAADIDDVSKALTDAFEYISSGISATTVRARRQLAAEFSF HHHCCCCCCCCCCCEEECHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC TGLELNYGELIDTKLRSFRPRQCGSRFTRLPAELPATVERLLGHRSASLPGVDRTVVQSH CCEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCC DGGFFSVFNSFMSHLVWDQRDKRCHMVLPDWNVDRMIKRLGTAQFMSFCYGRPNEGNVWS CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH KLFEPLYGLSDADMDDEGFLYAKGRPPVAVFNHEREPQLTYVHAYKLYKSGQFSRIRSQY HHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEEEEHHHCCCCHHHHHHHH NKVFRDHVRLRPRYQRELDEFRANFAGKFMIAAHVKHPSHVIEQPNGKIAHIQSYIDGIK HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH RQLEVRGLKRDSPDWAVFLATDQDRVINVFREEFGDKIFCYEDVRRTTEAEDARYDQLGP HHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEHHHHHHCCCHHCCCHHCCCC EERRAEGFQVQHLVAANPDNWNIRMAWEVIRDAMTMAHCNVLLHIVSNVSTAVSYMNPDI HHHHCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE ELVFCSAEEGESARH EEEEEECCCCCCCCC >Mature Secondary Structure MLNENFDFALFMSRHLEDVARKSGVEIGVGTLPLALDIEGLLSRPYRASSDGKVRFCSIA CCCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCEEEEHHHHHCCCCCCCCCCCEEEEEEE AFHARKGVEALVEGFIRAFGDRQDVELTIHSNLAIGSSFERVKKLVDSRKATNIVISCAA HHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEEEH LTDQEKNSLIEECDVFVNCSRGEGYSIGPREALALGKVLAITAVGGHNDLISTPGVFAIP HCCHHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHCCEEEEEEECCCCCCCCCCCCEEEC ATIAMPARYPEIDNLVVGRQFAADIDDVSKALTDAFEYISSGISATTVRARRQLAAEFSF HHHCCCCCCCCCCCEEECHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC TGLELNYGELIDTKLRSFRPRQCGSRFTRLPAELPATVERLLGHRSASLPGVDRTVVQSH CCEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCHHHHCCC DGGFFSVFNSFMSHLVWDQRDKRCHMVLPDWNVDRMIKRLGTAQFMSFCYGRPNEGNVWS CCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHH KLFEPLYGLSDADMDDEGFLYAKGRPPVAVFNHEREPQLTYVHAYKLYKSGQFSRIRSQY HHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEEEEHHHCCCCHHHHHHHH NKVFRDHVRLRPRYQRELDEFRANFAGKFMIAAHVKHPSHVIEQPNGKIAHIQSYIDGIK HHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCHHHHHHHHHHHH RQLEVRGLKRDSPDWAVFLATDQDRVINVFREEFGDKIFCYEDVRRTTEAEDARYDQLGP HHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHCCEEEEHHHHHHCCCHHCCCHHCCCC EERRAEGFQVQHLVAANPDNWNIRMAWEVIRDAMTMAHCNVLLHIVSNVSTAVSYMNPDI HHHHCCCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE ELVFCSAEEGESARH EEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA