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The map label for this gene is dedA [H]

Identifier: 115350715

GI number: 115350715

Start: 743474

End: 744247

Strand: Direct

Name: dedA [H]

Synonym: Bamb_0661

Alternate gene names: 115350715

Gene position: 743474-744247 (Clockwise)

Preceding gene: 115350712

Following gene: 115350717

Centisome position: 20.9

GC content: 63.7

Gene sequence:

>774_bases
ATGATGGCTCCGTTCCGCGCGCCGCCTTGGCTGGCGGGCGCTTCCGCTTTTTCCGGCCGTCACGGCCTTTTCGCCTTCGA
GGAATCGCATTTGGATACGCTGCTTCATTTCGTCAACCTGGTCCTGCATATCGACGCGTTCCTCGGCGACTTCATCCGGC
AGTACGGCGCATGGGTGTATCTGGTGTTGTTCCTGATCGTGTTTTGCGAGACGGGGCTCGTCGTGCTGCCGTTCCTGCCC
GGCGATTCGCTGCTGTTCATCGGCGGTGCGTTCGGGGCGACGGGCGACATGAACGTCGTCGTGCTGATCGTGCTGCTGCT
GGTCGCGGCGATTGCCGGCAATACCTTGAACTACGTGATCGGCCGCTGGGTCGGGCCGAAGGTGTTCAATACCCATATCC
CGGTGCTCGAACGCTTCCTCGACCGCGCGGCGCTGGAGAAGACCCACTCGTTCTACGACAAGCACGGCGGCAAGACGATC
GTGCTCGCGCGCTTCATTCCGGTCGTGCGCACGTTCGCGCCGTTCGTCGCCGGGGCGTCGTCGATGAGCTTCGCACGCTT
CCAGCTGTTCAACGTGATCGGCGCGCTGGTCTGGGTGCTGCTGCTGGTGCTGCTCGGTTACTTCTTCGGCAATATCCCGT
TCATCCGCCAGTATCTGAACGTGATCGTCCTGGTGGGGATTGGCGCGGCAATCGTGCCGATCGCGTTCGGCGCGCTGTGG
AAGCTGGTGCGCGGGCGGCACTCCGGCGATGCGCGCAAGACGGGCGGGCGCTGA

Upstream 100 bases:

>100_bases
TCGGTGATTTCGGACATGGCGGAATTATAGCGAGGCGGCGGATGCCTGCCGGCGCCGCCGGTGGTTACGTTTTTTCACGG
AGCCTTAAGGTAGTTTCGGT

Downstream 100 bases:

>100_bases
GCCGGCACGTTTCGCTTCGGCGCAGTAACAAGCGTGGCGGTTGCCACGCTTTTTTTTCGTCCGTGCGGTTCAGGTGGTGC
GATGCGCGAGCGGCGTTTCG

Product: DedA family transmembrane protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MMAPFRAPPWLAGASAFSGRHGLFAFEESHLDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVLPFLP
GDSLLFIGGAFGATGDMNVVVLIVLLLVAAIAGNTLNYVIGRWVGPKVFNTHIPVLERFLDRAALEKTHSFYDKHGGKTI
VLARFIPVVRTFAPFVAGASSMSFARFQLFNVIGALVWVLLLVLLGYFFGNIPFIRQYLNVIVLVGIGAAIVPIAFGALW
KLVRGRHSGDARKTGGR

Sequences:

>Translated_257_residues
MMAPFRAPPWLAGASAFSGRHGLFAFEESHLDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVLPFLP
GDSLLFIGGAFGATGDMNVVVLIVLLLVAAIAGNTLNYVIGRWVGPKVFNTHIPVLERFLDRAALEKTHSFYDKHGGKTI
VLARFIPVVRTFAPFVAGASSMSFARFQLFNVIGALVWVLLLVLLGYFFGNIPFIRQYLNVIVLVGIGAAIVPIAFGALW
KLVRGRHSGDARKTGGR
>Mature_257_residues
MMAPFRAPPWLAGASAFSGRHGLFAFEESHLDTLLHFVNLVLHIDAFLGDFIRQYGAWVYLVLFLIVFCETGLVVLPFLP
GDSLLFIGGAFGATGDMNVVVLIVLLLVAAIAGNTLNYVIGRWVGPKVFNTHIPVLERFLDRAALEKTHSFYDKHGGKTI
VLARFIPVVRTFAPFVAGASSMSFARFQLFNVIGALVWVLLLVLLGYFFGNIPFIRQYLNVIVLVGIGAAIVPIAFGALW
KLVRGRHSGDARKTGGR

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=205, Percent_Identity=52.6829268292683, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1789481, Length=164, Percent_Identity=40.2439024390244, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1789384, Length=169, Percent_Identity=36.094674556213, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 28175; Mature: 28175

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]