| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is nitA [H]
Identifier: 115350649
GI number: 115350649
Start: 666983
End: 667906
Strand: Direct
Name: nitA [H]
Synonym: Bamb_0595
Alternate gene names: 115350649
Gene position: 666983-667906 (Clockwise)
Preceding gene: 115350643
Following gene: 115350659
Centisome position: 18.75
GC content: 71.65
Gene sequence:
>924_bases ATGTCCACCTCAGTCATCGCCGCGCTGCAGATCGGCGCCTCGCCCGCCGGCACGCGCGCCACGCTCGACACGATCCTCGG CTACGAAACCGCGATCCGCGACAGCGGCGCGTCGCTCGTCGTGCTGCCCGAGGCCGTGCTCGGCGGCTATCCGAAAGGCG AGAGCTTCGGCACGCGGCTCGGCTATCGGTTGCCCGAAGGCCGCGACGCGTATGCGCGCTACGCCGCGCATGCGATCGAC GTGCCGGGGCCCGAAACCGACGAACTGGCCGCGCTGTCGCAGCGTACGGGGGCGAGCCTCGTGGTCGGCGTGATCGAGCG AGGCGGCAGCACGCTGTACTGCACGGCGCTGTTCTTCGACCCGCGCGACGGACTCGTCGCGAAGCACCGCAAGCTGATGC CGACCGGCACCGAGCGGCTGATCTGGGGGCAGGGCGACGGCTCGACGCTCCCGGTGGTCGACACGGCCGCGGGCCGCGCG GGTGCCGCGATCTGCTGGGAGAACCACATGCCGCTGCTGCGCTGCGCGATGTATGCGAAAGGCGTGCAGATCTGGTGCGC GCCGACCGTCGACGAGCGCGACCTGTGGCAAAGCTCGATGCGCCACATCGCGCACGAGGGGCGCTGCTTCGTCGTGAGCG CGTGCCAGGTGCAGCCGTCGCCGCGCGCGCTGGGCATCGACGTGCCGGGCTGGGATCCCGAGCGGCCGCTGATCCGCGGC GGCAGCGTGATCGTCGGGCCGCTCGGCGACCTGCTGACGGAGCCGCTGATCGGCGAGGCGGGCCTCGTCACCGCGCGCAT CGATACCGACGAACTCGTGCGGGCGCGCTACGACTTCGACGTGGTCGGGCACTATGCGCGCGCCGACGTGTTTTCGCTGC ACGTCGACGAGCGGCCGAAGCGGCCGGTGGTGTTCGAAGGCTGA
Upstream 100 bases:
>100_bases CGATATCATCCGCATTCATGTCAGTTATCGTTGTATCGATTTGATCGATGAAATGATATCGATAAAGATGGCGTCACCTC GTTCACCCGGAGACGCCTTC
Downstream 100 bases:
>100_bases CGGGCGTTGCCGGGGCGCCGACGTCCCGGCGCTCGAAGGGCGGCGCGGCTGGCGGGGCGGCATTCGGCTGCCGCCGCGCG CGTCAGCGCATCGGCGCTTC
Product: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 307; Mature: 306
Protein sequence:
>307_residues MSTSVIAALQIGASPAGTRATLDTILGYETAIRDSGASLVVLPEAVLGGYPKGESFGTRLGYRLPEGRDAYARYAAHAID VPGPETDELAALSQRTGASLVVGVIERGGSTLYCTALFFDPRDGLVAKHRKLMPTGTERLIWGQGDGSTLPVVDTAAGRA GAAICWENHMPLLRCAMYAKGVQIWCAPTVDERDLWQSSMRHIAHEGRCFVVSACQVQPSPRALGIDVPGWDPERPLIRG GSVIVGPLGDLLTEPLIGEAGLVTARIDTDELVRARYDFDVVGHYARADVFSLHVDERPKRPVVFEG
Sequences:
>Translated_307_residues MSTSVIAALQIGASPAGTRATLDTILGYETAIRDSGASLVVLPEAVLGGYPKGESFGTRLGYRLPEGRDAYARYAAHAID VPGPETDELAALSQRTGASLVVGVIERGGSTLYCTALFFDPRDGLVAKHRKLMPTGTERLIWGQGDGSTLPVVDTAAGRA GAAICWENHMPLLRCAMYAKGVQIWCAPTVDERDLWQSSMRHIAHEGRCFVVSACQVQPSPRALGIDVPGWDPERPLIRG GSVIVGPLGDLLTEPLIGEAGLVTARIDTDELVRARYDFDVVGHYARADVFSLHVDERPKRPVVFEG >Mature_306_residues STSVIAALQIGASPAGTRATLDTILGYETAIRDSGASLVVLPEAVLGGYPKGESFGTRLGYRLPEGRDAYARYAAHAIDV PGPETDELAALSQRTGASLVVGVIERGGSTLYCTALFFDPRDGLVAKHRKLMPTGTERLIWGQGDGSTLPVVDTAAGRAG AAICWENHMPLLRCAMYAKGVQIWCAPTVDERDLWQSSMRHIAHEGRCFVVSACQVQPSPRALGIDVPGWDPERPLIRGG SVIVGPLGDLLTEPLIGEAGLVTARIDTDELVRARYDFDVVGHYARADVFSLHVDERPKRPVVFEG
Specific function: Unknown
COG id: COG0388
COG function: function code R; Predicted amidohydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 CN hydrolase domain [H]
Homologues:
Organism=Caenorhabditis elegans, GI17557111, Length=306, Percent_Identity=47.0588235294118, Blast_Score=281, Evalue=2e-76, Organism=Saccharomyces cerevisiae, GI6322027, Length=197, Percent_Identity=65.989847715736, Blast_Score=270, Evalue=2e-73, Organism=Saccharomyces cerevisiae, GI6322026, Length=111, Percent_Identity=45.945945945946, Blast_Score=102, Evalue=1e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000132 - InterPro: IPR003010 [H]
Pfam domain/function: PF00795 CN_hydrolase [H]
EC number: =3.5.5.7 [H]
Molecular weight: Translated: 32904; Mature: 32773
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: PS00921 NITRIL_CHT_2 ; PS50263 CN_HYDROLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTSVIAALQIGASPAGTRATLDTILGYETAIRDSGASLVVLPEAVLGGYPKGESFGTRL CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHC GYRLPEGRDAYARYAAHAIDVPGPETDELAALSQRTGASLVVGVIERGGSTLYCTALFFD CCCCCCCCHHHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEEEEHHCCCCEEEEEEEEEC PRDGLVAKHRKLMPTGTERLIWGQGDGSTLPVVDTAAGRAGAAICWENHMPLLRCAMYAK CCCCHHHHHHCCCCCCCCEEEEECCCCCEECEEECCCCCCCEEEEECCCCHHHHHHHHHC GVQIWCAPTVDERDLWQSSMRHIAHEGRCFVVSACQVQPSPRALGIDVPGWDPERPLIRG CEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEECCCCCCCCCEEEC GSVIVGPLGDLLTEPLIGEAGLVTARIDTDELVRARYDFDVVGHYARADVFSLHVDERPK CCEEEECCHHHHCCCCCCCCCEEEEEECHHHHHHHHCCHHHHHHHHHCEEEEEEECCCCC RPVVFEG CCCEECC >Mature Secondary Structure STSVIAALQIGASPAGTRATLDTILGYETAIRDSGASLVVLPEAVLGGYPKGESFGTRL CCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHCCCCCCCCHHHHC GYRLPEGRDAYARYAAHAIDVPGPETDELAALSQRTGASLVVGVIERGGSTLYCTALFFD CCCCCCCCHHHHHHHHHEECCCCCCHHHHHHHHHCCCCEEEEEEHHCCCCEEEEEEEEEC PRDGLVAKHRKLMPTGTERLIWGQGDGSTLPVVDTAAGRAGAAICWENHMPLLRCAMYAK CCCCHHHHHHCCCCCCCCEEEEECCCCCEECEEECCCCCCCEEEEECCCCHHHHHHHHHC GVQIWCAPTVDERDLWQSSMRHIAHEGRCFVVSACQVQPSPRALGIDVPGWDPERPLIRG CEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEECCCCCCCCCEEEC GSVIVGPLGDLLTEPLIGEAGLVTARIDTDELVRARYDFDVVGHYARADVFSLHVDERPK CCEEEECCHHHHCCCCCCCCCEEEEEECHHHHHHHHCCHHHHHHHHHCEEEEEEECCCCC RPVVFEG CCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1400390 [H]