| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is leuS
Identifier: 115350603
GI number: 115350603
Start: 614255
End: 616849
Strand: Direct
Name: leuS
Synonym: Bamb_0549
Alternate gene names: 115350603
Gene position: 614255-616849 (Clockwise)
Preceding gene: 115350602
Following gene: 115350604
Centisome position: 17.27
GC content: 66.2
Gene sequence:
>2595_bases ATGCACGAGAGATACGTACCCGCCGACGTCGAAGCCGCCGCCCAGGGCGACTGGCGCGCAGCCGATGCCTACAAGACGAG GGAAGATTCGCAGAAGCCGAAGTTCTACTGCGTGTCGATGCTGCCGTATCCGTCCGGCAAGCTGCACATGGGTCACGTGC GCAACTACACGATCAACGACGTGATGTACCGCTATCTGCGGATGAACGGCTACAACACGCTGATGCCGATGGGCTGGGAC GCGTTCGGGATGCCGGCCGAGAACGCCGCGATGGCGAACGGCGTGCCGCCCGCGAAGTGGACCTACGACAACATCGACTA CATGAAGGGCCAGATGCAGTCGATGGGCCTCGCGATCGACTGGTCGCGCGAAATCGCGACGTGCAAGCCCGACTACTACA AGTGGAACCAGTGGCTGTTCCTGAAGATGCTCGAGAAGGGCATCGCGTACAAGAAGACGGGCACCGTGAACTGGGACCCG GTCGACCAGACCGTGCTCGCGAACGAGCAGGTGATCGACGGCCGCGGCTGGCGCTCGGGCGCGCTCGTCGAGAAGCGCGA GATCCCGATGTACTACCTGCGGATCACGCAATACGCCGATGAACTGCTGAACGATCTCGACGGCCTCGGCTGGCCCGAGC GCGTGAAGATCATGCAGCAGAACTGGATCGGCAAGAGCTTCGGCGTGAACTTCGGCTTCCCGTACGAACTCGACGGCGAG AAGGCGCTCCTGCGCGTGTTCACGACGCGTGCCGACACGATCCTGGGCGTCACGTTCTGCGCGGTCGCGGCCGAGCACCC GCTTGCCACGCGCCTCGCGCAGGGCAAGCCCGAACTGCAGGCGTTCATCGACGAATGCAAGCGCGGCGGCGTCGCCGAGG CCGATGTCGCGACGATGGAGAAGAAGGGCGTCGCGACGGGCTTCTCGGTGTCGCACCCGCTCACGGGCGAGCCGGTCGAG GTCTGGATCGGCAACTACGTGCTGATGAGCTATGGCGAAGGCGCGGTGATGGGCGTGCCGGGCCACGACGAGCGCGATTT CGCATTCGCGAAGAAGTACGGCCTGCCGATCAAGCAGGTGATTGCGAGCGAAGGGCAGACGTACTCGCTGGATGCGTGGC AGGAGTGGTACGGCGACAAGGAAACCGCGGTCTGCGTGAACAGCGGCAAGTACGACGGCCTGCGCTACGCGGATGCGGTC GACGCGGTCGCGGCCGACCTGAAGGCCGGCGGCTACGGCGACAAGCAGGTCACGTGGCGCCTGCGCGACTGGGGCGTGTC GCGCCAGCGCTACTGGGGCACGCCGATCCCGATCATCCACTGCCCGTCGTGCGGCGACGTGCCGGTGCCGGAGCAGGACC TGCCGGTCGTGCTGCCGGAAGACCTCGTGCCGGACGGCTCGGGTAACCCGCTCGCGAAGTCGGAAGCGTTCCTGAACTGC TCGTGCCCGAAGTGCGGCGCGGCCGCGAAGCGCGAGACCGACACGATGGATACCTTCGTCGATTCGTCGTGGTATTTCTC GCGCTACACGGCGCCGGACGCCGACACGATGGTCGACGCGCGCACCGATTACTGGATGCCGATGGATCAGTACATCGGCG GCATCGAGCACGCGATCCTGCACTTGCTGTATTCGCGCTTCTGGACCAAGGTGATGCGTGACCTCGGCCTCGTGAAGTTC GGCGAGCCGGCGAAGAACCTGCTCACGCAGGGGATGGTGCTGAACGAGACGTTCTACCGCGAAGACGCATCCGGCAAGAA GACCTGGTACAACCCGGCCGACGTGACGGTCACGCACGACGACAAGGGCCGCCCGGTCGGCGCGACGCTGAACACGGACG GCCAGCCGGTCGTGCTCGGCGGCATCGAGAAGATGTCGAAGTCGAAGAACAACGGCGTCGATCCGCAGGTGCTGATCGAC CAGTACGGCGCCGATACCGCGCGCCTGTTCACGATGTTCGCGGCGCCGCCCGAGCAGCAGCTCGAGTGGTCGGGCGCGGG TGTCGAAGGCGCGAGCCGCTTCCTGCGCCGTGTATGGAGCTTCGGCGCGACGAATCGCGAGGCGCTCGCTACGCGCGCGG GCTTCGACGCGGCCGCGCTCGGCGACGCCGACAAGGCGCTGCGCCGCGAAATCTACAGCGTGCTGAAGCAGGCCGATTTC GACTACCAACGCCTGCAGTACAACACGGTCGTGTCGGCCGCGATGAAGATGCTGAACGCGATCGACGGCGCGAAGGGCGC GACGCCCGCCGTGCTGCGCGAGACGTACGGCGTGCTGCTGCGCGTGCTGTACCCTGTCGTGCCGCACGTCACGTTCGAGC TGTGGAAGGCGCTCGGCTACGCGGACGAATTCGGCCCGCTGCTCGACGCACCGTGGCCGAAGGTCGACGAGGCCGCGCTC GAGCAGGCCGAGATCGAACTCGTGCTGCAGGTGAACGGCAAGGTGCGAGGCGCGCTGAAGGTCGCGAAGGACGCGAGCCG CGAGGCGATCGAAGCCGCGGCAGTGGCCGACGAAGCGTTCGCGAAGTTCAGCGACGGCAAGCCGGCGAAGAAGATCGTCG TCGTGCCCGGCCGCCTCGTGAACATCGTCGTCTGA
Upstream 100 bases:
>100_bases AGAACCGTGAGCCTGCTCCCGCCGCCGGGCTGCCCGATTTCGTCCACTTCCGCGTGCCCGCCTCGTGGCGCGCTGCTTAA AGCCTAGTCCGAACCACACC
Downstream 100 bases:
>100_bases CGGCCATTGGCCGTCGGGCGCACACAGAAGGAGCGAAGGTGATCCGCAGATCGTTTTTGGGGCTCGTCGGCAGCGCGGTC GCGCTGTCGGCATGCGGTTT
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS [H]
Number of amino acids: Translated: 864; Mature: 864
Protein sequence:
>864_residues MHERYVPADVEAAAQGDWRAADAYKTREDSQKPKFYCVSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNTLMPMGWD AFGMPAENAAMANGVPPAKWTYDNIDYMKGQMQSMGLAIDWSREIATCKPDYYKWNQWLFLKMLEKGIAYKKTGTVNWDP VDQTVLANEQVIDGRGWRSGALVEKREIPMYYLRITQYADELLNDLDGLGWPERVKIMQQNWIGKSFGVNFGFPYELDGE KALLRVFTTRADTILGVTFCAVAAEHPLATRLAQGKPELQAFIDECKRGGVAEADVATMEKKGVATGFSVSHPLTGEPVE VWIGNYVLMSYGEGAVMGVPGHDERDFAFAKKYGLPIKQVIASEGQTYSLDAWQEWYGDKETAVCVNSGKYDGLRYADAV DAVAADLKAGGYGDKQVTWRLRDWGVSRQRYWGTPIPIIHCPSCGDVPVPEQDLPVVLPEDLVPDGSGNPLAKSEAFLNC SCPKCGAAAKRETDTMDTFVDSSWYFSRYTAPDADTMVDARTDYWMPMDQYIGGIEHAILHLLYSRFWTKVMRDLGLVKF GEPAKNLLTQGMVLNETFYREDASGKKTWYNPADVTVTHDDKGRPVGATLNTDGQPVVLGGIEKMSKSKNNGVDPQVLID QYGADTARLFTMFAAPPEQQLEWSGAGVEGASRFLRRVWSFGATNREALATRAGFDAAALGDADKALRREIYSVLKQADF DYQRLQYNTVVSAAMKMLNAIDGAKGATPAVLRETYGVLLRVLYPVVPHVTFELWKALGYADEFGPLLDAPWPKVDEAAL EQAEIELVLQVNGKVRGALKVAKDASREAIEAAAVADEAFAKFSDGKPAKKIVVVPGRLVNIVV
Sequences:
>Translated_864_residues MHERYVPADVEAAAQGDWRAADAYKTREDSQKPKFYCVSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNTLMPMGWD AFGMPAENAAMANGVPPAKWTYDNIDYMKGQMQSMGLAIDWSREIATCKPDYYKWNQWLFLKMLEKGIAYKKTGTVNWDP VDQTVLANEQVIDGRGWRSGALVEKREIPMYYLRITQYADELLNDLDGLGWPERVKIMQQNWIGKSFGVNFGFPYELDGE KALLRVFTTRADTILGVTFCAVAAEHPLATRLAQGKPELQAFIDECKRGGVAEADVATMEKKGVATGFSVSHPLTGEPVE VWIGNYVLMSYGEGAVMGVPGHDERDFAFAKKYGLPIKQVIASEGQTYSLDAWQEWYGDKETAVCVNSGKYDGLRYADAV DAVAADLKAGGYGDKQVTWRLRDWGVSRQRYWGTPIPIIHCPSCGDVPVPEQDLPVVLPEDLVPDGSGNPLAKSEAFLNC SCPKCGAAAKRETDTMDTFVDSSWYFSRYTAPDADTMVDARTDYWMPMDQYIGGIEHAILHLLYSRFWTKVMRDLGLVKF GEPAKNLLTQGMVLNETFYREDASGKKTWYNPADVTVTHDDKGRPVGATLNTDGQPVVLGGIEKMSKSKNNGVDPQVLID QYGADTARLFTMFAAPPEQQLEWSGAGVEGASRFLRRVWSFGATNREALATRAGFDAAALGDADKALRREIYSVLKQADF DYQRLQYNTVVSAAMKMLNAIDGAKGATPAVLRETYGVLLRVLYPVVPHVTFELWKALGYADEFGPLLDAPWPKVDEAAL EQAEIELVLQVNGKVRGALKVAKDASREAIEAAAVADEAFAKFSDGKPAKKIVVVPGRLVNIVV >Mature_864_residues MHERYVPADVEAAAQGDWRAADAYKTREDSQKPKFYCVSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNTLMPMGWD AFGMPAENAAMANGVPPAKWTYDNIDYMKGQMQSMGLAIDWSREIATCKPDYYKWNQWLFLKMLEKGIAYKKTGTVNWDP VDQTVLANEQVIDGRGWRSGALVEKREIPMYYLRITQYADELLNDLDGLGWPERVKIMQQNWIGKSFGVNFGFPYELDGE KALLRVFTTRADTILGVTFCAVAAEHPLATRLAQGKPELQAFIDECKRGGVAEADVATMEKKGVATGFSVSHPLTGEPVE VWIGNYVLMSYGEGAVMGVPGHDERDFAFAKKYGLPIKQVIASEGQTYSLDAWQEWYGDKETAVCVNSGKYDGLRYADAV DAVAADLKAGGYGDKQVTWRLRDWGVSRQRYWGTPIPIIHCPSCGDVPVPEQDLPVVLPEDLVPDGSGNPLAKSEAFLNC SCPKCGAAAKRETDTMDTFVDSSWYFSRYTAPDADTMVDARTDYWMPMDQYIGGIEHAILHLLYSRFWTKVMRDLGLVKF GEPAKNLLTQGMVLNETFYREDASGKKTWYNPADVTVTHDDKGRPVGATLNTDGQPVVLGGIEKMSKSKNNGVDPQVLID QYGADTARLFTMFAAPPEQQLEWSGAGVEGASRFLRRVWSFGATNREALATRAGFDAAALGDADKALRREIYSVLKQADF DYQRLQYNTVVSAAMKMLNAIDGAKGATPAVLRETYGVLLRVLYPVVPHVTFELWKALGYADEFGPLLDAPWPKVDEAAL EQAEIELVLQVNGKVRGALKVAKDASREAIEAAAVADEAFAKFSDGKPAKKIVVVPGRLVNIVV
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family [H]
Homologues:
Organism=Homo sapiens, GI7661872, Length=865, Percent_Identity=36.9942196531792, Blast_Score=538, Evalue=1e-153, Organism=Escherichia coli, GI1786861, Length=874, Percent_Identity=50.1144164759725, Blast_Score=865, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=390, Percent_Identity=24.1025641025641, Blast_Score=85, Evalue=2e-17, Organism=Caenorhabditis elegans, GI71997517, Length=262, Percent_Identity=40.8396946564886, Blast_Score=218, Evalue=9e-57, Organism=Caenorhabditis elegans, GI71997510, Length=262, Percent_Identity=40.8396946564886, Blast_Score=218, Evalue=1e-56, Organism=Caenorhabditis elegans, GI212645227, Length=352, Percent_Identity=29.2613636363636, Blast_Score=142, Evalue=8e-34, Organism=Saccharomyces cerevisiae, GI6323414, Length=834, Percent_Identity=40.1678657074341, Blast_Score=559, Evalue=1e-160, Organism=Saccharomyces cerevisiae, GI6321531, Length=401, Percent_Identity=23.6907730673317, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI21355409, Length=896, Percent_Identity=35.6026785714286, Blast_Score=453, Evalue=1e-127, Organism=Drosophila melanogaster, GI281366294, Length=482, Percent_Identity=21.1618257261411, Blast_Score=77, Evalue=8e-14,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 [H]
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1 [H]
EC number: =6.1.1.4 [H]
Molecular weight: Translated: 95923; Mature: 95923
Theoretical pI: Translated: 5.21; Mature: 5.21
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHERYVPADVEAAAQGDWRAADAYKTREDSQKPKFYCVSMLPYPSGKLHMGHVRNYTIND CCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHH VMYRYLRMNGYNTLMPMGWDAFGMPAENAAMANGVPPAKWTYDNIDYMKGQMQSMGLAID HHHHHHHHCCCCEECCCCCCCCCCCCCCCHHCCCCCCCCEECCCHHHHHHHHHHCCEEEE WSREIATCKPDYYKWNQWLFLKMLEKGIAYKKTGTVNWDPVDQTVLANEQVIDGRGWRSG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCEEECCCCCCCC ALVEKREIPMYYLRITQYADELLNDLDGLGWPERVKIMQQNWIGKSFGVNFGFPYELDGE CCEECCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHCCCCCCCCEEECCH KALLRVFTTRADTILGVTFCAVAAEHPLATRLAQGKPELQAFIDECKRGGVAEADVATME HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH KKGVATGFSVSHPLTGEPVEVWIGNYVLMSYGEGAVMGVPGHDERDFAFAKKYGLPIKQV HCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEECCCCCCCCHHHHHHHCCCHHHH IASEGQTYSLDAWQEWYGDKETAVCVNSGKYDGLRYADAVDAVAADLKAGGYGDKQVTWR HHCCCCEEECHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEE LRDWGVSRQRYWGTPIPIIHCPSCGDVPVPEQDLPVVLPEDLVPDGSGNPLAKSEAFLNC EHHCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEECCHHCCCCCCCCCCCCCCCEEEC SCPKCGAAAKRETDTMDTFVDSSWYFSRYTAPDADTMVDARTDYWMPMDQYIGGIEHAIL CCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEECCCCCCCCHHHHHCHHHHHHH HLLYSRFWTKVMRDLGLVKFGEPAKNLLTQGMVLNETFYREDASGKKTWYNPADVTVTHD HHHHHHHHHHHHHHCCCEECCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEC DKGRPVGATLNTDGQPVVLGGIEKMSKSKNNGVDPQVLIDQYGADTARLFTMFAAPPEQQ CCCCEECEEECCCCCEEEEECHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHEECCCCHHH LEWSGAGVEGASRFLRRVWSFGATNREALATRAGFDAAALGDADKALRREIYSVLKQADF CEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCC DYQRLQYNTVVSAAMKMLNAIDGAKGATPAVLRETYGVLLRVLYPVVPHVTFELWKALGY CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKVRGALKVAKDASREAIEAAAVADEAF CHHHCCCCCCCCCCCCHHHHHHCCEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHH AKFSDGKPAKKIVVVPGRLVNIVV HHCCCCCCCCEEEECCCCEEEEEC >Mature Secondary Structure MHERYVPADVEAAAQGDWRAADAYKTREDSQKPKFYCVSMLPYPSGKLHMGHVRNYTIND CCCCCCCCCCHHHCCCCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHH VMYRYLRMNGYNTLMPMGWDAFGMPAENAAMANGVPPAKWTYDNIDYMKGQMQSMGLAID HHHHHHHHCCCCEECCCCCCCCCCCCCCCHHCCCCCCCCEECCCHHHHHHHHHHCCEEEE WSREIATCKPDYYKWNQWLFLKMLEKGIAYKKTGTVNWDPVDQTVLANEQVIDGRGWRSG CCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCEEECCCCCCCC ALVEKREIPMYYLRITQYADELLNDLDGLGWPERVKIMQQNWIGKSFGVNFGFPYELDGE CCEECCCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHCCCCCCCCEEECCH KALLRVFTTRADTILGVTFCAVAAEHPLATRLAQGKPELQAFIDECKRGGVAEADVATME HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHH KKGVATGFSVSHPLTGEPVEVWIGNYVLMSYGEGAVMGVPGHDERDFAFAKKYGLPIKQV HCCCCCCCCCCCCCCCCCCEEEECCEEEEECCCCCEEECCCCCCCCHHHHHHHCCCHHHH IASEGQTYSLDAWQEWYGDKETAVCVNSGKYDGLRYADAVDAVAADLKAGGYGDKQVTWR HHCCCCEEECHHHHHHCCCCCEEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCEEEEE LRDWGVSRQRYWGTPIPIIHCPSCGDVPVPEQDLPVVLPEDLVPDGSGNPLAKSEAFLNC EHHCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEECCHHCCCCCCCCCCCCCCCEEEC SCPKCGAAAKRETDTMDTFVDSSWYFSRYTAPDADTMVDARTDYWMPMDQYIGGIEHAIL CCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCEEECCCCCCCCHHHHHCHHHHHHH HLLYSRFWTKVMRDLGLVKFGEPAKNLLTQGMVLNETFYREDASGKKTWYNPADVTVTHD HHHHHHHHHHHHHHCCCEECCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCEEEEEC DKGRPVGATLNTDGQPVVLGGIEKMSKSKNNGVDPQVLIDQYGADTARLFTMFAAPPEQQ CCCCEECEEECCCCCEEEEECHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHEECCCCHHH LEWSGAGVEGASRFLRRVWSFGATNREALATRAGFDAAALGDADKALRREIYSVLKQADF CEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHCCC DYQRLQYNTVVSAAMKMLNAIDGAKGATPAVLRETYGVLLRVLYPVVPHVTFELWKALGY CHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKVRGALKVAKDASREAIEAAAVADEAF CHHHCCCCCCCCCCCCHHHHHHCCEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHH AKFSDGKPAKKIVVVPGRLVNIVV HHCCCCCCCCEEEECCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA