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The map label for this gene is exbD1 [H]

Identifier: 115350602

GI number: 115350602

Start: 613519

End: 613974

Strand: Direct

Name: exbD1 [H]

Synonym: Bamb_0548

Alternate gene names: 115350602

Gene position: 613519-613974 (Clockwise)

Preceding gene: 115350601

Following gene: 115350603

Centisome position: 17.25

GC content: 72.37

Gene sequence:

>456_bases
ATGGCATTCGGCGGACTGGAGCACCACAAGACATCCGCGCCGATGGCGGAGATCAACATGACGCCGCTGATCGACGTGAT
GCTCGTGCTGCTCGTCATCTTCATCATTACCGCGCCGCTGATGACGCACGCGATCCGGCTCGACCTGCCGAAGGTCGCGG
CCGGCGTCGCGCGCGATACGCCGCAATCGGTCACGCTGTCGATCGACGACGCCGGCAAGCTGTACTGGGACGACACACCC
GTCGCACTCGACGCGCTGCCGGCGCGCTTTCAGGCCGCCGCCGCGGGCGCCGCGCCGCCCGAGCTGCGGCTGCGCGCGTC
GCGCGCGACCCGCTACGACGTGATCGCGCAGGTGATGGGCGCCGCGCAGGCCGCGGGCCTCACGCGAATCGGCTTCGTCA
CCGACGTGCCGCCGGCGGGCGCCGCCGCGCCGGCCGCCGCGGGCGCGAAACCCTGA

Upstream 100 bases:

>100_bases
CTCGTGCGCCAACTCGCCGAGGAACTCGACGGCTTCGCGCGCGACCTGCACGTATTCGTGTGCGCGCAGGGCGCCTGACG
CGCAGCCGGGAGGAGCGACC

Downstream 100 bases:

>100_bases
CCTGCCGGCCGCCTGCGAGCCCGGCGCAGGCAAGAATGCGCCGCGGCCCGCGAGACCCGGCCGTACCGCCCGCCACGGAC
GGTATAATCGTCGTTTCCGC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDTPQSVTLSIDDAGKLYWDDTP
VALDALPARFQAAAAGAAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP

Sequences:

>Translated_151_residues
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDTPQSVTLSIDDAGKLYWDDTP
VALDALPARFQAAAAGAAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP
>Mature_150_residues
AFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDTPQSVTLSIDDAGKLYWDDTPV
ALDALPARFQAAAAGAAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=138, Percent_Identity=31.8840579710145, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15589; Mature: 15458

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDT
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
PQSVTLSIDDAGKLYWDDTPVALDALPARFQAAAAGAAPPELRLRASRATRYDVIAQVMG
CCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHH
AAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP
HHHHCCCEEECEEECCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAAGVARDT
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCC
PQSVTLSIDDAGKLYWDDTPVALDALPARFQAAAAGAAPPELRLRASRATRYDVIAQVMG
CCEEEEEECCCCCEEECCCCCHHHHHHHHHHHHHCCCCCHHHEEHHHHHHHHHHHHHHHH
AAQAAGLTRIGFVTDVPPAGAAAPAAAGAKP
HHHHCCCEEECEEECCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]