Click here to switch to the map view.

The map label for this gene is alc2 [H]

Identifier: 115350596

GI number: 115350596

Start: 608834

End: 609841

Strand: Direct

Name: alc2 [H]

Synonym: Bamb_0542

Alternate gene names: 115350596

Gene position: 608834-609841 (Clockwise)

Preceding gene: 115350595

Following gene: 115350597

Centisome position: 17.12

GC content: 69.94

Gene sequence:

>1008_bases
ATGGCAGCCCCCATCCTCGATCCGAACGCGCCGGCTTTCACGCGGCGCTACATGAACCTCGCCGACCCGCGCCTGGGCGC
GCAGGCGCTCTTCGCGAGCGACGAATTCTTCGCGCCGAAGGAGCGCATGCTCAATCCCGAGCCGGCCGTGTTCATCCCCG
GCAAGTATGACGATCACGGCAAGTGGATGGACGGCTGGGAAACGCGCCGCAAGCGCACCACCGGCCACGACTTCTGCGTG
GTCCGGCTCGCGCGGCCGGGCGTGATCTACGGCGTCGATCTCGATACGAGCCACTTCACCGGCAACTTCCCGCCGGCTGC
GTCGATCGACGCCTGCGCGGTGGACGGCGATACGCCGCCGGAGGACGCCGAATGGCGTACGCTCGTGCCCGCGACGACGC
TGCAGGGCAATTCGCATCACTATGTCGGCGTCGACGACGCGCAACCGGTCACGCACCTGCGCGTGAACCTGTATCCGGAC
GGCGGGCTCGCGCGCCTGCGCGTGTACGGCCAGCCGCAGCGCGACTGGCGCCACGTACCGGCGGGCGAGCTCGTCGATCT
CGCGGCGATCGAGAACGGCGGCTACCTGGTGGCCGCGAACAACCAGCACTTCGGCGCGGCCTCGCAGATGCTGATGCCGG
GGCGCGGCGCGAACATGGGCGACGGCTGGGAAACGCGGCGGCGCCGCGAGCCCGGCAACGACTGGGCGATCGTCGCGCTG
GCGCGGCCGGGCATCATCCGGCGCGTCGAGGTCGATACGGCATTCTTCAAGGGCAACTTCCCCGACCGCTGTTCGCTGCA
GGCCGCGCGGGTCGCGGGCGGCACCGACGACTCGCTCGTCACGCAGGCGATGTTCTGGGCCGAACTGCTCGGCGAGCAGA
AGCTGCAGATGGACCACGTGCATACGTTCGACCAGCTCGCGGCACTCGGCCCCGTCACGCACGTGCGCTTCAACATCTTC
CCGGACGGCGGCGTGTCGCGCCTGCGTCTGTGGGGCGAGCCGGCTTGA

Upstream 100 bases:

>100_bases
CACGCGCGCGCAGCGGCTTTCCCGGCCGCTGCGCGCGATTGCATTTCCCGCGGCCGGCGCCACGACGCGCCGGCCCATCT
CGAAAAATAGTGGAGACGAC

Downstream 100 bases:

>100_bases
AGGAGGGCAACGGCATGAGCGGACCCCATATCCTGCGCGTCGAGCGCCTGACCCGCGAAGCGTTCGCGCCGTTCGGCGAC
GTGATCGCGCTCGAAGGCGC

Product: allantoicase

Products: NA

Alternate protein names: Allantoate amidinohydrolase 2 [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MAAPILDPNAPAFTRRYMNLADPRLGAQALFASDEFFAPKERMLNPEPAVFIPGKYDDHGKWMDGWETRRKRTTGHDFCV
VRLARPGVIYGVDLDTSHFTGNFPPAASIDACAVDGDTPPEDAEWRTLVPATTLQGNSHHYVGVDDAQPVTHLRVNLYPD
GGLARLRVYGQPQRDWRHVPAGELVDLAAIENGGYLVAANNQHFGAASQMLMPGRGANMGDGWETRRRREPGNDWAIVAL
ARPGIIRRVEVDTAFFKGNFPDRCSLQAARVAGGTDDSLVTQAMFWAELLGEQKLQMDHVHTFDQLAALGPVTHVRFNIF
PDGGVSRLRLWGEPA

Sequences:

>Translated_335_residues
MAAPILDPNAPAFTRRYMNLADPRLGAQALFASDEFFAPKERMLNPEPAVFIPGKYDDHGKWMDGWETRRKRTTGHDFCV
VRLARPGVIYGVDLDTSHFTGNFPPAASIDACAVDGDTPPEDAEWRTLVPATTLQGNSHHYVGVDDAQPVTHLRVNLYPD
GGLARLRVYGQPQRDWRHVPAGELVDLAAIENGGYLVAANNQHFGAASQMLMPGRGANMGDGWETRRRREPGNDWAIVAL
ARPGIIRRVEVDTAFFKGNFPDRCSLQAARVAGGTDDSLVTQAMFWAELLGEQKLQMDHVHTFDQLAALGPVTHVRFNIF
PDGGVSRLRLWGEPA
>Mature_334_residues
AAPILDPNAPAFTRRYMNLADPRLGAQALFASDEFFAPKERMLNPEPAVFIPGKYDDHGKWMDGWETRRKRTTGHDFCVV
RLARPGVIYGVDLDTSHFTGNFPPAASIDACAVDGDTPPEDAEWRTLVPATTLQGNSHHYVGVDDAQPVTHLRVNLYPDG
GLARLRVYGQPQRDWRHVPAGELVDLAAIENGGYLVAANNQHFGAASQMLMPGRGANMGDGWETRRRREPGNDWAIVALA
RPGIIRRVEVDTAFFKGNFPDRCSLQAARVAGGTDDSLVTQAMFWAELLGEQKLQMDHVHTFDQLAALGPVTHVRFNIFP
DGGVSRLRLWGEPA

Specific function: Unknown

COG id: COG4266

COG function: function code F; Allantoicase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the allantoicase family [H]

Homologues:

Organism=Homo sapiens, GI144953901, Length=368, Percent_Identity=39.4021739130435, Blast_Score=261, Evalue=6e-70,
Organism=Saccharomyces cerevisiae, GI6322220, Length=331, Percent_Identity=34.1389728096677, Blast_Score=206, Evalue=6e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005164
- InterPro:   IPR015908
- InterPro:   IPR008979 [H]

Pfam domain/function: PF03561 Allantoicase [H]

EC number: =3.5.3.4 [H]

Molecular weight: Translated: 36976; Mature: 36845

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPILDPNAPAFTRRYMNLADPRLGAQALFASDEFFAPKERMLNPEPAVFIPGKYDDHG
CCCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHCCCCCCCEEECCCCCCCC
KWMDGWETRRKRTTGHDFCVVRLARPGVIYGVDLDTSHFTGNFPPAASIDACAVDGDTPP
CCCCCHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC
EDAEWRTLVPATTLQGNSHHYVGVDDAQPVTHLRVNLYPDGGLARLRVYGQPQRDWRHVP
CCCCCEEECCEEEECCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCHHHCCCC
AGELVDLAAIENGGYLVAANNQHFGAASQMLMPGRGANMGDGWETRRRREPGNDWAIVAL
CCCEEEEEEECCCCEEEEECCCCCCCHHHEECCCCCCCCCCCHHHHHCCCCCCCEEEEEE
ARPGIIRRVEVDTAFFKGNFPDRCSLQAARVAGGTDDSLVTQAMFWAELLGEQKLQMDHV
ECCCEEEEEEECEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
HTFDQLAALGPVTHVRFNIFPDGGVSRLRLWGEPA
HHHHHHHHHCCEEEEEEEEECCCCCEEEEEECCCC
>Mature Secondary Structure 
AAPILDPNAPAFTRRYMNLADPRLGAQALFASDEFFAPKERMLNPEPAVFIPGKYDDHG
CCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCCCCCHHHCCCCCCCEEECCCCCCCC
KWMDGWETRRKRTTGHDFCVVRLARPGVIYGVDLDTSHFTGNFPPAASIDACAVDGDTPP
CCCCCHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCC
EDAEWRTLVPATTLQGNSHHYVGVDDAQPVTHLRVNLYPDGGLARLRVYGQPQRDWRHVP
CCCCCEEECCEEEECCCCCEEEECCCCCCEEEEEEEEECCCCEEEEEEECCCCHHHCCCC
AGELVDLAAIENGGYLVAANNQHFGAASQMLMPGRGANMGDGWETRRRREPGNDWAIVAL
CCCEEEEEEECCCCEEEEECCCCCCCHHHEECCCCCCCCCCCHHHHHCCCCCCCEEEEEE
ARPGIIRRVEVDTAFFKGNFPDRCSLQAARVAGGTDDSLVTQAMFWAELLGEQKLQMDHV
ECCCEEEEEEECEEEEECCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
HTFDQLAALGPVTHVRFNIFPDGGVSRLRLWGEPA
HHHHHHHHHCCEEEEEEEEECCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA