Definition Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence.
Accession NC_008390
Length 3,556,545

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The map label for this gene is 115350486

Identifier: 115350486

GI number: 115350486

Start: 483374

End: 485242

Strand: Direct

Name: 115350486

Synonym: Bamb_0432

Alternate gene names: NA

Gene position: 483374-485242 (Clockwise)

Preceding gene: 115350485

Following gene: 115350487

Centisome position: 13.59

GC content: 67.52

Gene sequence:

>1869_bases
GTGGTATCTGCCGGCGCCTCTCTTCGTTTCCGCCGCCATATTCCGTCCGATTTCCGACCGATTGCCACGATGACCCAGCC
GATCCGTTATTCGATTGCCCCGAAAGATCTTGCCGCGCACCTGTTCGAAGTGTCGGTGACGGTCACCGATCCCGATCCCG
AAGGCCAGCGCTTCTCGCTGCCGGTATGGATTCCCGGCAGCTACCTCGTGCGCGAATTCGCGCGCAACATCGTGACGCTC
GCCGCGTTCAACGACGCGGGCCGCAAGGTGCGGATCGCAAAAACCGACAAGAACACGTGGCAGGCCGCGCCGGTGAACGG
CACGCTGACGCTGCGCTACGACGTGTACGCGTGGGATCTGTCGGTCCGCTCCGCGTATCTCGACGAATCGGGCGGCTTCT
TCAACGCCACGGCCGTGTTCCTGAGCGTCGCCGGTCGCGAGGATGCACCGTGCGAAGTCGACATCGCGAAACCGGCGGGC
GCGGCGTTCCGCACGTGGCGCGTCGGCACGTCGCTGCCCGAGGCGCGCGGCACCAGGCGTTACGGGTTCGGCGCATATCG
GGCCGCGAACTATGACGAACTCACCGACCATCCGGTGACGATCGGCGAATTCGCGCTCGCGACGTTCGACGCGCACGGCG
TGCCGCACGACATCGTGATCGCCGGGCGCGTGACGCAGCTCGACATGGAGCGGCTGCGCGCCGACCTGAAGCGCGTGTGC
GAAGCGCAGATCGCGCTGTTCGAGCCGAAATCGAAGAAGGCGCCGATGGACCGCTACGTGTTCATGACGCTCGCGGTCAG
CGACGGCTACGGCGGCCTCGAGCACCGTGCGTCGACCGCGCTGATCTGCAACCGCACCGATCTGCCGGTGAAGGGCCGGT
CGGAAACGACGGAAGGCTATCGCACCTATCTCGGCCTGTGCAGCCACGAGTATTTCCACACGTGGAACGTGAAGCGCATC
AAGCCGGCCGCGTTCGTGCCGTACGACCTCGCGCGGGAGAACTACACGTCGCTGCTGTGGCTGTTCGAGGGCTTCACGTC
GTATTACGACGACCTGATGCTCGTGCGCAGCGGGCTGATGTCGCAGGACGACTATTTCGCGGCGCTCGGCCGTACCGTCG
GCGGCGTGCTGCGCGGCACGGGGCGCCTGAAGCAAAGCGTCGCGGACAGCTCGTTCGACGCGTGGATCAAGTATTACCGC
CAGGACGAGAACGCGACCAACGCGATCGTCAGCTATTACACGAAGGGTTCGCTCGTCGCGCTCGCGTTCGATCTCGCGAT
CCGCGCACAGACGCGCGACCGCAAGTCGCTGGACGACGTGATGCGTCTGCTGTGGCAGCGCTACGGCCGTGAGTTCTATC
GTGGCAAGCAGGCGGGCGTCGAGGAAAACGAGGTCGAGGCGCTGATCGAGGAAGCGACGGGCGTGGCCCTCGGCCGACTG
TTCGCCGACGCCGTGCACGGCACGCGCGACCTGCCGCTCGCCGAACTGCTCGCGCCGTTCGGCGTGACGCTCGCGCCCGA
GGTCGCGGCTGGCGCGGCCGCGAAACCGACGATCGGCGCGCGCCTGCGCGGCGGCGCGGACTGCACGCTGGCGGCGGTGT
ACGAGGGCGGCGGCGCGCATCGCGCGGGGCTGTCGGCCGGCGACACGCTGATCGCGCTCGACGGGCTGCGCGTCACCGGC
ACGAATCTCGACACGCTGCTCGCGCGCTACCGGCCGGGCGACAAGGTCGAGGTGCACGCATTCCGCCGCGACGAGCTGCG
GACCGCGAAGCTGAAGCTGGACGGGCCTGAGATCATGCGCTACCGGCTTACAGCGGACGCGAAACCGGCCGCCGCACGCA
AGTCCCGGGAAATCTGGCTCAAGGGCTGA

Upstream 100 bases:

>100_bases
CCGGGCGCGGTGTCGGCCGATCAGCTGAACCAGGCGCTCGCGTCGAGCAAGTAACCGACCGGCACGCCGGGCCGCATGGC
CCGGCCAGCGAGGGGCGCCC

Downstream 100 bases:

>100_bases
TCCTGCACGAGCGGCTTTAGGGGCGCGACCATCGATTGTTCTGCTGGTGCAACAATCCGTCGCCCCTGAGCCGCTTTTTC
ACGACGATGCGGCCACGCAC

Product: peptidase M61 domain-containing protein

Products: NA

Alternate protein names: Peptidase M; Protease; M61 Family Peptidase; Pdz/Dhr/Glgf; M61 Glycyl Aminopeptidase; M61 Family Glycyl Aminopeptidase; Trypsin-Like Serine Protease; Aminopeptidase N Family Protein; Metallopeptidase; PDZ Domain-Containing Protein; Protease With C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGFPeptidase M; PDZ Domain Protein; Glycyl Aminopeptidase; Signaling Protein; M61 Glycyl Aminopeptidase Protein; M61 Glycyl Aminopeptidase Family Protein

Number of amino acids: Translated: 622; Mature: 622

Protein sequence:

>622_residues
MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTL
AAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAG
AAFRTWRVGTSLPEARGTRRYGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC
EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGYRTYLGLCSHEYFHTWNVKRI
KPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYR
QDENATNAIVSYYTKGSLVALAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL
FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAHRAGLSAGDTLIALDGLRVTG
TNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMRYRLTADAKPAAARKSREIWLKG

Sequences:

>Translated_622_residues
MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTL
AAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAG
AAFRTWRVGTSLPEARGTRRYGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC
EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGYRTYLGLCSHEYFHTWNVKRI
KPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYR
QDENATNAIVSYYTKGSLVALAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL
FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAHRAGLSAGDTLIALDGLRVTG
TNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMRYRLTADAKPAAARKSREIWLKG
>Mature_622_residues
MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSLPVWIPGSYLVREFARNIVTL
AAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDLSVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAG
AAFRTWRVGTSLPEARGTRRYGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC
EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGYRTYLGLCSHEYFHTWNVKRI
KPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLMSQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYR
QDENATNAIVSYYTKGSLVALAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL
FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAHRAGLSAGDTLIALDGLRVTG
TNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMRYRLTADAKPAAARKSREIWLKG

Specific function: Unknown

COG id: COG3975

COG function: function code R; Predicted protease with the C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 68731; Mature: 68731

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSL
CCCCCCCEEEHHCCCCCCCCHHHHCCCEEEECCHHHHHEEEEEEEEEEECCCCCCCEEEE
PVWIPGSYLVREFARNIVTLAAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDL
EEEECHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEE
SVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTSLPEARGTRR
EHHHHHCCCCCCEEEHEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
YGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC
CCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH
EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGY
HHHHEEECCCCCCCCCCEEEEEEEEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHH
RTYLGLCSHEYFHTWNVKRIKPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLM
HHHHHHHCCCCEEECCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVA
CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHEEECCCCEEE
LAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL
EEEEHHHCCCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAH
HHHHHCCCCCCCHHHHHHHCCCEECCHHHCCCCCCCCCCCEECCCCCEEEEEEEECCCCC
RAGLSAGDTLIALDGLRVTGTNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMR
CCCCCCCCEEEEECCEEEECCCHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCHHHEE
YRLTADAKPAAARKSREIWLKG
EEECCCCCCHHHCCCCEEEECC
>Mature Secondary Structure
MVSAGASLRFRRHIPSDFRPIATMTQPIRYSIAPKDLAAHLFEVSVTVTDPDPEGQRFSL
CCCCCCCEEEHHCCCCCCCCHHHHCCCEEEECCHHHHHEEEEEEEEEEECCCCCCCEEEE
PVWIPGSYLVREFARNIVTLAAFNDAGRKVRIAKTDKNTWQAAPVNGTLTLRYDVYAWDL
EEEECHHHHHHHHHHHEEEEEEECCCCCEEEEEECCCCCEEECCCCCEEEEEEEEEEEEE
SVRSAYLDESGGFFNATAVFLSVAGREDAPCEVDIAKPAGAAFRTWRVGTSLPEARGTRR
EHHHHHCCCCCCEEEHEEEEEEECCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
YGFGAYRAANYDELTDHPVTIGEFALATFDAHGVPHDIVIAGRVTQLDMERLRADLKRVC
CCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH
EAQIALFEPKSKKAPMDRYVFMTLAVSDGYGGLEHRASTALICNRTDLPVKGRSETTEGY
HHHHEEECCCCCCCCCCEEEEEEEEEECCCCCCHHCCCEEEEECCCCCCCCCCCCCCHHH
RTYLGLCSHEYFHTWNVKRIKPAAFVPYDLARENYTSLLWLFEGFTSYYDDLMLVRSGLM
HHHHHHHCCCCEEECCCCEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
SQDDYFAALGRTVGGVLRGTGRLKQSVADSSFDAWIKYYRQDENATNAIVSYYTKGSLVA
CCCHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHEEECCCCEEE
LAFDLAIRAQTRDRKSLDDVMRLLWQRYGREFYRGKQAGVEENEVEALIEEATGVALGRL
EEEEHHHCCCCCCCCCHHHHHHHHHHHHCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FADAVHGTRDLPLAELLAPFGVTLAPEVAAGAAAKPTIGARLRGGADCTLAAVYEGGGAH
HHHHHCCCCCCCHHHHHHHCCCEECCHHHCCCCCCCCCCCEECCCCCEEEEEEEECCCCC
RAGLSAGDTLIALDGLRVTGTNLDTLLARYRPGDKVEVHAFRRDELRTAKLKLDGPEIMR
CCCCCCCCEEEEECCEEEECCCHHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCHHHEE
YRLTADAKPAAARKSREIWLKG
EEECCCCCCHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA