| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115350455
Identifier: 115350455
GI number: 115350455
Start: 451163
End: 452296
Strand: Direct
Name: 115350455
Synonym: Bamb_0401
Alternate gene names: NA
Gene position: 451163-452296 (Clockwise)
Preceding gene: 115350454
Following gene: 115350456
Centisome position: 12.69
GC content: 72.22
Gene sequence:
>1134_bases GTGACCGATTTCCCCGTTTTCCACTGGACCGACGCCGACGGCGCCGAACATGCCGTGCGCTGGCGCTCCGAAGCCGGCGT GCAGCCGCCGAAGCGCGCCGTGCCGGCCGATGACCGCCTCACCGCCGATGCCGCGTACCGCCTCGCATGCGAGGGCACCG CGCTCGTCTGGCAGGGCGACTTCCAGAATGCGCGCCAGCTCGTGCAGGCGATGGCCCGCCGCGTCGAACGCAAGCCGAAG AAGGCGAAGGCCGCGGCCGGCGCCGACGCATTCAACCTGCATCGGCTCGCGCAATCGCAGCGCGCCCGCACGCTCGGGAT GCTGCTGATCCCGCTCGATGCCGACTACAGGATCCCGCTGCGCCGCGCGCCCGACGTGCGCGCCGCGTGCGAGGAAGCGT ACGGGCCGGGCGGCGCGCCGTCGGTCGTGTCGCTGCGCGAACTGCTCGGTCTCGTCGGCGCGCACGAATGGCGCAAGAAG GGCGTGCCGATTCCGGCGCTCGGCGGCGCGCCGATCCATCCGCATTACGGCGTGTTTTCGCCGGTGCGCGGCGAATACGT CGAACTCGTCGCGCGCGCGCCGCTGCCGGCGACGTCGCTCGCGTTCGACATCGGCACCGGCACCGGCGTGCTCGCGGCCG TGCTCGCATCGCGCGGCGTCGAGCGTATCGTCGCGACCGACCAGGATCCGCGCGCGCTTGCGTGTGCACGCGAGAACATC GCGCGGCTCGGCCACGCCGATCGCGTCGACATCGTCGAAGCCGACCTGTTTCCGGCCGGCCGCGCGCCGCTCGTCGTGTG CAACCCGCCGTGGGTGCCGGCCCGCCCGAGCGCGCCGATCGAATATGCGGTCTACGATCCCGACAGCCGCATGCTGCGCG GTTTCCTCGCCGGGCTCGCCGACCATCTCGAACCGCGCGGCGAAGGCTGGCTGATCCTGTCCGATTTCGCCGAGCATCTC GGCCTGCGGCCGCGTGAAACGTTGCTGCAATGGATCGATGAAGCCGGTCTCGTGGTGCTCGGCCGCGAAGACATCCGCCC CGCGCATCCGAAGTCGACCGACGCGGACGATCCGCTGCACGCGGCACGCCGCGCCGAGCTCACGTCGCTCTGGCGGCTCG GCGCGCGGGCCTGA
Upstream 100 bases:
>100_bases CGCGGCCCCCGTTTTTGCGAGGCCGGACAAAGCGCGGTATGGTGTCGTCCGCGCGGTGAATTCTCGCCGCCTGTCTGAAG CCAACCGTAGCCGAGCTCGC
Downstream 100 bases:
>100_bases TCGCGCATTTTCGGTAAACTGTCGCCATTCCTCACGAATTCACGCCGCCGGGCCGTGGTCACCCGACCATGGCCCGGCGC CGCTTCACGATGTCGAACAA
Product: methyltransferase small
Products: NA
Alternate protein names: Methyltransferase; Methylase Of Polypeptide Chain Release Factors; Methyltransferase Domain Protein; Adenine Specific DNA-Methyltransferase; Polypeptide Chain Release Factor Methylase; ElmF Protein; N5-Glutamine Methyltransferase; Methyltransferase SmallRibosomal; RNA Methyltransferase; Methylase Of Polypeptide Chain Release Factors Protein; Methyltransferase Small Domain-Containing Protein; 50S Ribosomal Methyltransferase PrmA Family Protein; Methylase
Number of amino acids: Translated: 377; Mature: 376
Protein sequence:
>377_residues MTDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGDFQNARQLVQAMARRVERKPK KAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPLRRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKK GVPIPALGGAPIHPHYGVFSPVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLADHLEPRGEGWLILSDFAEHL GLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLHAARRAELTSLWRLGARA
Sequences:
>Translated_377_residues MTDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGDFQNARQLVQAMARRVERKPK KAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPLRRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKK GVPIPALGGAPIHPHYGVFSPVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLADHLEPRGEGWLILSDFAEHL GLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLHAARRAELTSLWRLGARA >Mature_376_residues TDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGDFQNARQLVQAMARRVERKPKK AKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPLRRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKKG VPIPALGGAPIHPHYGVFSPVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENIA RLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLADHLEPRGEGWLILSDFAEHLG LRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLHAARRAELTSLWRLGARA
Specific function: Unknown
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40940; Mature: 40809
Theoretical pI: Translated: 7.69; Mature: 7.69
Prosite motif: PS00092 N6_MTASE ; PS00296 CHAPERONINS_CPN60
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGD CCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEECCEEEEEECC FQNARQLVQAMARRVERKPKKAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPL HHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCC RRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKKGVPIPALGGAPIHPHYGVFS CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCC PVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI CCCHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHH ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLA HHCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH DHLEPRGEGWLILSDFAEHLGLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLH HHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH AARRAELTSLWRLGARA HHHHHHHHHHHHHCCCC >Mature Secondary Structure TDFPVFHWTDADGAEHAVRWRSEAGVQPPKRAVPADDRLTADAAYRLACEGTALVWQGD CCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHEEEEECCEEEEEECC FQNARQLVQAMARRVERKPKKAKAAAGADAFNLHRLAQSQRARTLGMLLIPLDADYRIPL HHHHHHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCEEEEECCCCCCCCC RRAPDVRAACEEAYGPGGAPSVVSLRELLGLVGAHEWRKKGVPIPALGGAPIHPHYGVFS CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCCCCCCCC PVRGEYVELVARAPLPATSLAFDIGTGTGVLAAVLASRGVERIVATDQDPRALACARENI CCCHHHHHHHHHCCCCHHHEEEECCCCHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHH ARLGHADRVDIVEADLFPAGRAPLVVCNPPWVPARPSAPIEYAVYDPDSRMLRGFLAGLA HHCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHH DHLEPRGEGWLILSDFAEHLGLRPRETLLQWIDEAGLVVLGREDIRPAHPKSTDADDPLH HHCCCCCCCEEEHHHHHHHHCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHH AARRAELTSLWRLGARA HHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA