| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is 115350453
Identifier: 115350453
GI number: 115350453
Start: 450047
End: 450541
Strand: Direct
Name: 115350453
Synonym: Bamb_0399
Alternate gene names: NA
Gene position: 450047-450541 (Clockwise)
Preceding gene: 115350450
Following gene: 115350454
Centisome position: 12.65
GC content: 72.73
Gene sequence:
>495_bases ATGCCACGAGCCCTGTTCCTTATCGCGCCGCTGCGCGCCGTGCTGCTGCTGTTCGCCGCCGCCTTCGTGCTCGGCGGTTG CGCGGGCTTCACGCGCGAGCCCGTGAGCGTGTCCGTCGCCGGGCTCGACCCGCTGGTCGGGCAGGGCCTCGAGATGCGCT TCAGCCTGAAGCTGCGCGTGCAGAACCCGAATGACACGCCGATCGAATACGACGGCATTTCGGTCGCGCTCGACCTGAAC GGCACGCCGTTCGCGAGCGGCGTCAGCGATCGCTCGGGCGTCGTGCCGCGTTTCGGCGAGGCGGTGATCGACGTGCCCGT TTCGGTCTCGGCGTTCGCCGCCGCGCGGCAGGCGTGGAACCTGCCCGGCGCGGCGGCCAGCGGCGAGCTGCCGTACGCGT TGCGCGGGCGGCTCGCGGGCGGTGTGCTCGGCAGCGTGCATTTCCGCGACGCGGGCACGTTGCGCATGCCGGCGACGCCG GGATGGGGCGGGTAG
Upstream 100 bases:
>100_bases TCTCGGCGCTACGCGAAAACTACGAATTCCGGGGTGGCGGGGCGCGCTCGGTACAATGCATCGACAACCTGTCGATCGAT TGCCGCAAGGAGGCCAGCCG
Downstream 100 bases:
>100_bases ATGTGCTGGCAACGTCGGCCAAATGTCACGAAAAGTTGACGAATTAACAGTCTTCAACAGTCTGCTTGGCGGAAGTTGGA TTGTGGTGGTTGCGGCTCCT
Product: hypothetical protein
Products: NA
Alternate protein names: Water Stress And Hypersensitive Response Domain Protein; Water Stress/Hypersensitive Response Protein; Secreted Protein
Number of amino acids: Translated: 164; Mature: 163
Protein sequence:
>164_residues MPRALFLIAPLRAVLLLFAAAFVLGGCAGFTREPVSVSVAGLDPLVGQGLEMRFSLKLRVQNPNDTPIEYDGISVALDLN GTPFASGVSDRSGVVPRFGEAVIDVPVSVSAFAAARQAWNLPGAAASGELPYALRGRLAGGVLGSVHFRDAGTLRMPATP GWGG
Sequences:
>Translated_164_residues MPRALFLIAPLRAVLLLFAAAFVLGGCAGFTREPVSVSVAGLDPLVGQGLEMRFSLKLRVQNPNDTPIEYDGISVALDLN GTPFASGVSDRSGVVPRFGEAVIDVPVSVSAFAAARQAWNLPGAAASGELPYALRGRLAGGVLGSVHFRDAGTLRMPATP GWGG >Mature_163_residues PRALFLIAPLRAVLLLFAAAFVLGGCAGFTREPVSVSVAGLDPLVGQGLEMRFSLKLRVQNPNDTPIEYDGISVALDLNG TPFASGVSDRSGVVPRFGEAVIDVPVSVSAFAAARQAWNLPGAAASGELPYALRGRLAGGVLGSVHFRDAGTLRMPATPG WGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16930; Mature: 16799
Theoretical pI: Translated: 8.51; Mature: 8.51
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRALFLIAPLRAVLLLFAAAFVLGGCAGFTREPVSVSVAGLDPLVGQGLEMRFSLKLRV CCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCEEEEEEEEEE QNPNDTPIEYDGISVALDLNGTPFASGVSDRSGVVPRFGEAVIDVPVSVSAFAAARQAWN ECCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCC LPGAAASGELPYALRGRLAGGVLGSVHFRDAGTLRMPATPGWGG CCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCC >Mature Secondary Structure PRALFLIAPLRAVLLLFAAAFVLGGCAGFTREPVSVSVAGLDPLVGQGLEMRFSLKLRV CCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCEEEEEEEEEE QNPNDTPIEYDGISVALDLNGTPFASGVSDRSGVVPRFGEAVIDVPVSVSAFAAARQAWN ECCCCCCEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCC LPGAAASGELPYALRGRLAGGVLGSVHFRDAGTLRMPATPGWGG CCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA