| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350449
Identifier: 115350449
GI number: 115350449
Start: 444887
End: 445858
Strand: Direct
Name: 115350449
Synonym: Bamb_0395
Alternate gene names: NA
Gene position: 444887-445858 (Clockwise)
Preceding gene: 115350443
Following gene: 115350450
Centisome position: 12.51
GC content: 72.12
Gene sequence:
>972_bases ATGAGTGCGCCGGAAAATTCAAATTCGAAAACCCCGCCCAGCCTGCTGTCCGATACCAAACCGGCAGGCGGGGGCGGGCC GCAGCAATCGCGCATTCTCGCGAATCTGGAAGGACGTGTCACGCCGCCAGCCGAGGCCCCGCGCCGTTCGCTGAAGGGGC CGATCGCGGCCGTCGTCGCGCTCGTGGTCGCCGTCGGCGGCTGGGGCGCGTGGCGCTGGCAGCAGCAATCGGGCGAGCAG GCCGTCGTCGCCGCCGCGCCCGTGCCGGCACCGGCGAAGGTCGAGACGGCCAGCGGCGGCGCCCCGCAGGTCGCGCAGAA TGCAGCGTCGGCCGCGCCCGCCGCGCAACCCGCGACGATTGTCAATGACGATGCCGCGTCCCAGACCGTTGCGTCCGCAT CCCCTGCGTCGGGCGCCGACAGCAGCCGCTTGTCGCGCGCGCTCGCGAGCGGTGCCGACGATGCATCGGGCGCAGCCACG GCAGGCGCCGCCACAGCAGGCGCTGCCACGGCCGCCGCCGCAGCGGCGACGAAAACGGCGAAGGCCGACACCGCGAAGGG CGACAAGGTCGCCGCACACGGCAAGGCCGATGCGAAGGCCGACACGAAGGCGGATGCCCGCAAGCATCACAAGGAACAGC AGGCGGAGCTCGCGCAGGCGAAGAAGCGTCGCGAAGCGACGACCCGTACCGCGAGCGCGAAGGCGTCCGGCAAGGACGAT CCGGATGCGGATCTGCTCGCCGCGCTCGTCGCCCGCACGAAGCCGGCCGACAAGAAGGCCGCCGCACAGAAGGGGCAGGC CGTGCCGACCAAGACGGCCGCCACGACGGGCGGTTCGCTCGCATCGCGCGTGAAGGATTGCTCGGAGCGCGGTTTCTTCG AGGATCAGCTGTGCCGCTGGCGCGTCTGCGACGGCCACTGGGGCAAGGATCCGGCCTGCCCGACCGCCGCGCAGTCGGAG CCGCGGCAGTAA
Upstream 100 bases:
>100_bases TTGATTGTGTTTTGCAATGCTTGCTCTTAGAATCAGGCTGCCTTGAGAGGCCGGGCTATATTATCGCGGTGAATTAAACC AGGATTCAATGAGACGCTGA
Downstream 100 bases:
>100_bases TCTTCGGCTTCGCGCCGGCTCGCTTATCGCACATGCGCCGCCCAATGGGCGGCGCATTGCTTTTTGGGATAGGCTGACGA GGCCGGGACGGTGCGTATGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MSAPENSNSKTPPSLLSDTKPAGGGGPQQSRILANLEGRVTPPAEAPRRSLKGPIAAVVALVVAVGGWGAWRWQQQSGEQ AVVAAAPVPAPAKVETASGGAPQVAQNAASAAPAAQPATIVNDDAASQTVASASPASGADSSRLSRALASGADDASGAAT AGAATAGAATAAAAAATKTAKADTAKGDKVAAHGKADAKADTKADARKHHKEQQAELAQAKKRREATTRTASAKASGKDD PDADLLAALVARTKPADKKAAAQKGQAVPTKTAATTGGSLASRVKDCSERGFFEDQLCRWRVCDGHWGKDPACPTAAQSE PRQ
Sequences:
>Translated_323_residues MSAPENSNSKTPPSLLSDTKPAGGGGPQQSRILANLEGRVTPPAEAPRRSLKGPIAAVVALVVAVGGWGAWRWQQQSGEQ AVVAAAPVPAPAKVETASGGAPQVAQNAASAAPAAQPATIVNDDAASQTVASASPASGADSSRLSRALASGADDASGAAT AGAATAGAATAAAAAATKTAKADTAKGDKVAAHGKADAKADTKADARKHHKEQQAELAQAKKRREATTRTASAKASGKDD PDADLLAALVARTKPADKKAAAQKGQAVPTKTAATTGGSLASRVKDCSERGFFEDQLCRWRVCDGHWGKDPACPTAAQSE PRQ >Mature_322_residues SAPENSNSKTPPSLLSDTKPAGGGGPQQSRILANLEGRVTPPAEAPRRSLKGPIAAVVALVVAVGGWGAWRWQQQSGEQA VVAAAPVPAPAKVETASGGAPQVAQNAASAAPAAQPATIVNDDAASQTVASASPASGADSSRLSRALASGADDASGAATA GAATAGAATAAAAAATKTAKADTAKGDKVAAHGKADAKADTKADARKHHKEQQAELAQAKKRREATTRTASAKASGKDDP DADLLAALVARTKPADKKAAAQKGQAVPTKTAATTGGSLASRVKDCSERGFFEDQLCRWRVCDGHWGKDPACPTAAQSEP RQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32224; Mature: 32092
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPENSNSKTPPSLLSDTKPAGGGGPQQSRILANLEGRVTPPAEAPRRSLKGPIAAVVA CCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHH LVVAVGGWGAWRWQQQSGEQAVVAAAPVPAPAKVETASGGAPQVAQNAASAAPAAQPATI HHHHHCCCCCCCCHHCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCEE VNDDAASQTVASASPASGADSSRLSRALASGADDASGAATAGAATAGAATAAAAAATKTA ECCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH KADTAKGDKVAAHGKADAKADTKADARKHHKEQQAELAQAKKRREATTRTASAKASGKDD HCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PDADLLAALVARTKPADKKAAAQKGQAVPTKTAATTGGSLASRVKDCSERGFFEDQLCRW CHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHEE RVCDGHWGKDPACPTAAQSEPRQ EECCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SAPENSNSKTPPSLLSDTKPAGGGGPQQSRILANLEGRVTPPAEAPRRSLKGPIAAVVA CCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHCCHHHHHHH LVVAVGGWGAWRWQQQSGEQAVVAAAPVPAPAKVETASGGAPQVAQNAASAAPAAQPATI HHHHHCCCCCCCCHHCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHCCCCCCCCEE VNDDAASQTVASASPASGADSSRLSRALASGADDASGAATAGAATAGAATAAAAAATKTA ECCCHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHH KADTAKGDKVAAHGKADAKADTKADARKHHKEQQAELAQAKKRREATTRTASAKASGKDD HCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PDADLLAALVARTKPADKKAAAQKGQAVPTKTAATTGGSLASRVKDCSERGFFEDQLCRW CHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCHHHHHEE RVCDGHWGKDPACPTAAQSEPRQ EECCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA