| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350436
Identifier: 115350436
GI number: 115350436
Start: 426364
End: 427854
Strand: Direct
Name: 115350436
Synonym: Bamb_0382
Alternate gene names: NA
Gene position: 426364-427854 (Clockwise)
Preceding gene: 115350435
Following gene: 115350437
Centisome position: 11.99
GC content: 62.91
Gene sequence:
>1491_bases ATGAACCAGCAAACGGCTGCGGCCCAAGCGAGCGGCGCGGAATACGCCGCCGGGACTTCGTTGCTCGACGATATCGTCGA GAAGAGCAAGGTCGCGAAATCCGATTCCGAGCATGCGCGTGCGAAGGACCTGATCGGCGAACTCGTGCACCAGGTGCTCG ACGGCACGGTGATCGTGTCGGACAACCTGTCGGCGACGATCGACGCGCGCGTCGCGGAGCTCGACCGCCTGATCTCCACG CAGCTCTCCGCGGTGATGCACGCGCCGGAATTCCAGCGCCTGGAAAGCACGTGGCGCGGGATGGACTACCTGGTCAAGGA AAGCAACACGGGCCAGACGATCAAGATCAAGGCGCTGCACGCCCCGAAGCGCGACCTCGTGCGCGACTTCAAGGGCGCGA GCGAGTTCGACCAGAGCGCGCTGTTCAAGAAGGTCTACGAAGAAGAGTTCGGCACGTTCGGCGGCTCGCCGTTCGGCGCG CTGATCGGCGACTACGAGATCTCGCGCCAGCCGGAAGACATGTACTTCATCGAGCAGATGTCGCACGTCGCGGCCGCCGC GCATGCGCCGTTCATCGCGTCGGCGTCGCCGGAGCTGCTCGGCCTCGAGTCGTTCTCCGACCTCGGCAAGCCGCGCGATC TCGGCAAGGTGTTCGACACGGTCGAATACGCGAAGTGGAAGTCGTTCCGCGATTCCGAGGATTCGCGCTACGTCGGCCTC ACGCTGCCGCGCTTCCTCGGCCGCCTGCCGTTCAATCCGAAGGACGGCCAGACCGCGGAGAACTTCAACTTCGTCGAGGA TGTGGACGGCACCGAGCACGACAAGTACCTGTGGTGCAACGCGGCGTGGGCATTCGCGGCACGCCTGACCGCCGCGTTCG ACGACTTCGGCTGGTGCGCGGCGATCCGCGGCGTCGAAGGCGGTGGCCTCGTCGAGGATCTGCCGACCCACACGTTCAAG ACCGACGACGGTGAAGTCGCGCTGAAGTGCCCGACCGAAATCGCGATCACCGATCGCCGCGAGAAGGAGCTGAGCGACCT CGGCTTCATCCCGCTCGTTCATTGCAAGAACTCGGATTACGCTGCGTTCTTCGCCGCGCAATCGGTGCAGAAACCGAAAA AATACAGCACCGACAGCGCGAATGCGAATGCCGTCCTGTCCGCCCAGCTTCAGTACATCTTCTCGGTATCGCGCGTCGCG CACTACCTGAAGGCGATGATGCGGGACAAGATCGGCAGCTTCGCATCGGCGCAGAACGTGGAGACTTTCCTCAACCGGTG GATTTCGCAGTACGTCCTGCTCGACGACAACGCATCGCAGGAACAGAAGGCGCAATTCCCGCTGCGCGAGGCATCCATAC AAGTGTCAGAGATTCCGGGGAAGCCGGGCTCGTATCGTTCGGTCGCGTTCCTGCGCCCGCACTTTCAGCTCGACGAACTC TCGATTTCTCTGCGACTTGTCGCTGATCTGCCCAAACCGGCAAATTCATAA
Upstream 100 bases:
>100_bases GGATCTGCTGTCGGAAGTGCTGAAGAACACGCAGCAGCTGCAGGAGCTCGCGAAGGGCACGGGCGGCGACAAAGACGGCG AATGACGACGGAGTATTGAG
Downstream 100 bases:
>100_bases GCGAGCAAATCGCCCGGGCGGGCCGCCTGGGTAGGACGTTAAAACCACCTCTTTGGGGAGTCGAAGGGCCATGTTACATA TGCACTTGCAGTTTGGTAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 496; Mature: 496
Protein sequence:
>496_residues MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST QLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL SISLRLVADLPKPANS
Sequences:
>Translated_496_residues MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST QLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL SISLRLVADLPKPANS >Mature_496_residues MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVSDNLSATIDARVAELDRLIST QLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALHAPKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGA LIGDYEISRQPEDMYFIEQMSHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCAAIRGVEGGGLVEDLPTHTFK TDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDYAAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVA HYLKAMMRDKIGSFASAQNVETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL SISLRLVADLPKPANS
Specific function: Unknown
COG id: COG3517
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54871; Mature: 54871
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVS CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEE DNLSATIDARVAELDRLISTQLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALH CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEEECCCCCCEEEEEEEC APKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGALIGDYEISRQPEDMYFIEQM CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH SHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL HHHHHHHCCCEECCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCA EHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHH AIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY HHCCCCCCCCHHHCCCCCEECCCCCEEEECCCEEEECCCHHHHHHHCCCEEEEEECCCCC AAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL HHHHHHHHHHEEEECCCCCHHHHHCCCHHHHCEEEEECCCCCCCCCEEEEECCCCEEHHH SISLRLVADLPKPANS EEEEEEEECCCCCCCC >Mature Secondary Structure MNQQTAAAQASGAEYAAGTSLLDDIVEKSKVAKSDSEHARAKDLIGELVHQVLDGTVIVS CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEE DNLSATIDARVAELDRLISTQLSAVMHAPEFQRLESTWRGMDYLVKESNTGQTIKIKALH CCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHEEECCCCCCEEEEEEEC APKRDLVRDFKGASEFDQSALFKKVYEEEFGTFGGSPFGALIGDYEISRQPEDMYFIEQM CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHH SHVAAAAHAPFIASASPELLGLESFSDLGKPRDLGKVFDTVEYAKWKSFRDSEDSRYVGL HHHHHHHCCCEECCCCCCCEECHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE TLPRFLGRLPFNPKDGQTAENFNFVEDVDGTEHDKYLWCNAAWAFAARLTAAFDDFGWCA EHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCHHH AIRGVEGGGLVEDLPTHTFKTDDGEVALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY HHCCCCCCCCHHHCCCCCEECCCCCEEEECCCEEEECCCHHHHHHHCCCEEEEEECCCCC AAFFAAQSVQKPKKYSTDSANANAVLSAQLQYIFSVSRVAHYLKAMMRDKIGSFASAQNV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ETFLNRWISQYVLLDDNASQEQKAQFPLREASIQVSEIPGKPGSYRSVAFLRPHFQLDEL HHHHHHHHHHEEEECCCCCHHHHHCCCHHHHCEEEEECCCCCCCCCEEEEECCCCEEHHH SISLRLVADLPKPANS EEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA