| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
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The map label for this gene is 115350419
Identifier: 115350419
GI number: 115350419
Start: 404330
End: 405241
Strand: Direct
Name: 115350419
Synonym: Bamb_0364
Alternate gene names: NA
Gene position: 404330-405241 (Clockwise)
Preceding gene: 115350418
Following gene: 115350420
Centisome position: 11.37
GC content: 54.5
Gene sequence:
>912_bases GTGGAAGAGGGCAGCCATCGTATCCCGTACGCGTTACACCACAAAGATTGGGTATACGGAACGCAGAGCGCGGAAGAATT GCGGAGCACTGGGGAACCCATCGAGCCGCCCGAATATCGTCCGGAAATGGCCGGCAAAATATTCTGTCCGGCCTGCACGA CTCCCCTGAGCAGGACCCCGAAGGCGGCGGATGTGTTTACAAACAGCCGAACAGCGCACTTCAAGCACCAGCCTGCGTTT AAGGACGTACCGTGCAGTCTGCGCACAAAACGTGGCCCAGGGTTGCACTACACCACTGAAGAAGAGCTGAAGCGCGCCGC CCAGAGCGAGGAACTGGTCATAGTTGGAGGGTGGCAGAATCAACCCCCCGTGCAACCAATCGACGAAATGGATCCCGATG GTGCATACAATCTCACACAAATCGAAGATCCCGACGGCCCTCTCACTGAAGTTCCGCTAGGTCGGCACACCGGTGAACGC TTCTTCTTGCCAAGTAAGCTGTCCACGGTACTGGCTATCTGCCGAAATTTCGATAGAAACCTTGCGCGCGGCTTCTTTTT CCCAGATAGCCAGTACGCAACGCTTCTGGTCGACAAACTTTTTGACATCGCCCTTTTGACGGACGAGCCGCCACCGAACG CTCACCTGTTCTATGGCCGGGTGCGTTCCGTGTCTCGCCTGAACCGCCGCGACAAGCTGACCCTAGAATCCGACGAAGGT ATTCAAGTAAAGGTATATACATGGCCCGAACACAATGATCGCAAGAAGATCTCTAGTTCCGCCATTGGGCGCATGCTTTT GTTCTATGCGAGCCTCTACAAAGAGAATGATGGAATCCTTGCATGTAAAATAGACGCGTGGGGAGCCTACAGCTTGCTCC CGGAAAAATACGAGCATTGTTTGCCTGATTGA
Upstream 100 bases:
>100_bases GCAACCATCGCGTGGCTTCGCGCTTGATTGATTAGACAAATAATGCCAACCTAAATTATGAGAGCGGCTCGCATTGTCAT TTGAACCTTCGGAGGACGTC
Downstream 100 bases:
>100_bases TATCGGACTTCTCTGAAGTTGGGTTGTCCTCCCTTATTGAGGAACGCGCAGTTTTCATCACGACGCCTCAAATTGCGATC CTTGCAAGCTTGGATGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 303; Mature: 303
Protein sequence:
>303_residues MEEGSHRIPYALHHKDWVYGTQSAEELRSTGEPIEPPEYRPEMAGKIFCPACTTPLSRTPKAADVFTNSRTAHFKHQPAF KDVPCSLRTKRGPGLHYTTEEELKRAAQSEELVIVGGWQNQPPVQPIDEMDPDGAYNLTQIEDPDGPLTEVPLGRHTGER FFLPSKLSTVLAICRNFDRNLARGFFFPDSQYATLLVDKLFDIALLTDEPPPNAHLFYGRVRSVSRLNRRDKLTLESDEG IQVKVYTWPEHNDRKKISSSAIGRMLLFYASLYKENDGILACKIDAWGAYSLLPEKYEHCLPD
Sequences:
>Translated_303_residues MEEGSHRIPYALHHKDWVYGTQSAEELRSTGEPIEPPEYRPEMAGKIFCPACTTPLSRTPKAADVFTNSRTAHFKHQPAF KDVPCSLRTKRGPGLHYTTEEELKRAAQSEELVIVGGWQNQPPVQPIDEMDPDGAYNLTQIEDPDGPLTEVPLGRHTGER FFLPSKLSTVLAICRNFDRNLARGFFFPDSQYATLLVDKLFDIALLTDEPPPNAHLFYGRVRSVSRLNRRDKLTLESDEG IQVKVYTWPEHNDRKKISSSAIGRMLLFYASLYKENDGILACKIDAWGAYSLLPEKYEHCLPD >Mature_303_residues MEEGSHRIPYALHHKDWVYGTQSAEELRSTGEPIEPPEYRPEMAGKIFCPACTTPLSRTPKAADVFTNSRTAHFKHQPAF KDVPCSLRTKRGPGLHYTTEEELKRAAQSEELVIVGGWQNQPPVQPIDEMDPDGAYNLTQIEDPDGPLTEVPLGRHTGER FFLPSKLSTVLAICRNFDRNLARGFFFPDSQYATLLVDKLFDIALLTDEPPPNAHLFYGRVRSVSRLNRRDKLTLESDEG IQVKVYTWPEHNDRKKISSSAIGRMLLFYASLYKENDGILACKIDAWGAYSLLPEKYEHCLPD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34376; Mature: 34376
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEEGSHRIPYALHHKDWVYGTQSAEELRSTGEPIEPPEYRPEMAGKIFCPACTTPLSRTP CCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCEEECCCCCCCCCCCC KAADVFTNSRTAHFKHQPAFKDVPCSLRTKRGPGLHYTTEEELKRAAQSEELVIVGGWQN CHHHHHCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC QPPVQPIDEMDPDGAYNLTQIEDPDGPLTEVPLGRHTGERFFLPSKLSTVLAICRNFDRN CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH LARGFFFPDSQYATLLVDKLFDIALLTDEPPPNAHLFYGRVRSVSRLNRRDKLTLESDEG HHHCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCEEEHHHHHHHHHHCCCCCEEEECCCC IQVKVYTWPEHNDRKKISSSAIGRMLLFYASLYKENDGILACKIDAWGAYSLLPEKYEHC CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCHHHHHHC LPD CCC >Mature Secondary Structure MEEGSHRIPYALHHKDWVYGTQSAEELRSTGEPIEPPEYRPEMAGKIFCPACTTPLSRTP CCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCHHCCCEEECCCCCCCCCCCC KAADVFTNSRTAHFKHQPAFKDVPCSLRTKRGPGLHYTTEEELKRAAQSEELVIVGGWQN CHHHHHCCCCCEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC QPPVQPIDEMDPDGAYNLTQIEDPDGPLTEVPLGRHTGERFFLPSKLSTVLAICRNFDRN CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHH LARGFFFPDSQYATLLVDKLFDIALLTDEPPPNAHLFYGRVRSVSRLNRRDKLTLESDEG HHHCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCEEEHHHHHHHHHHCCCCCEEEECCCC IQVKVYTWPEHNDRKKISSSAIGRMLLFYASLYKENDGILACKIDAWGAYSLLPEKYEHC CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCHHHHHHC LPD CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA