| Definition | Burkholderia ambifaria AMMD chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008390 |
| Length | 3,556,545 |
Click here to switch to the map view.
The map label for this gene is thiE [H]
Identifier: 115350386
GI number: 115350386
Start: 377500
End: 378624
Strand: Direct
Name: thiE [H]
Synonym: Bamb_0331
Alternate gene names: 115350386
Gene position: 377500-378624 (Clockwise)
Preceding gene: 115350385
Following gene: 115350387
Centisome position: 10.61
GC content: 72.44
Gene sequence:
>1125_bases ATGAGCGAGCGCTTTGCCGATGCGTTCTGGCCGCCGGCCGACGAGCTGGCCGAAGCGGCCGAGCGGATTCGCGCCCGCCT GGGCGACTGGCCGGCCGGCACGACGCCGTGGCGGCTGTGCGTCGCGGCGCCCGACGTGCCGGTCGACGGCGACGTGCTGA TCGTGTCGGCCGGCGACCGTGCCGCGCAGGCGCGCGCGTCGGCCGCATCGCGCCCCGCGGCGCCGGATGCGGTCGCGATC GAGTTCGACGAACACGGCGCGACGCTGCATGCCGCGGGCGTGCGCCATGCGCTGGAAGCCGCGCATCCGCTCGGCGACGA CTGGATCGCGGCACTCGCCGCATTCCTCGATTGCGGTTTCGCGCCGATCGACGCGCTGGTGCTGGCGCTCGCGTGGCGTG ACGGCGACGAAACGCGCGGCGCGGATGCGTGGCCGGTCGACGCCGCGCGATTTCCGCGCGTCGCCGGCCTGGCCGCCGCG CCGGAGCCCGCATTCCCGCCGTGCCCCGCGCAACTCGGCCTGTATCCGGTCGTCCCCGACGCCGAATGGGTCGAGCGCGT GCTCGATTGCGGCGCGCGGACCGTGCAGCTGCGCGTGAAAGGCGCGCACCCTGCCGCGTTGCGCGGCGAAATCGCGCGTG CGGTCGCGGCCGGGCGCCGCTATCCCGATGCGCGCGTGTTCATCAACGATCACTGGCAGATCGCGGTAGAAGAGGGGGCG TACGGCGTACATCTGGGTCAGGAAGACCTGGAGACGGCCGATCTGGCCGCGATCGCGCACGCGGGCCTACGGCTCGGGCT GTCGAGCCACGGCTATTACGAAATGTTGCGGGCATTGCACGAGCGCCCGAGCTATCTCGCGCTCGGCCCCGTGTACGCGA CCGCGACCAAGGCAGTTGCGGCGCCGCCGCAGGGACTCGCGCGGATCGCCCGCTATGCGCGCTTCGCGGGCGCGCGGGCG CCGCTCGTCGCGATCGGCGGCGTGGGCCTCGACGCGTTGCCTGACGTGCTCGCGACGGGCGTCGGCAGCGTCGCGGTCGT CAGTGCGATCACGGGCGCGATCGATTATCGGGCGGCGGTTGTTGCGTTGCAGCAATGTTTTGCCCGACAATTTGACAATC ATTGA
Upstream 100 bases:
>100_bases GTGCGGCCTACCTCGCCGGGCCGATGGACGCGCGCGAGACCGCGCACGCGAGCACGCCGGTCGTCGGGATGCCGTTCTGG CACCAGGACGGGGGCGGCGC
Downstream 100 bases:
>100_bases CCGCAGGGCCTGGAACGCCGTCACGACATCATTCCAATGCAGGCCCTATAATTCGGCGTTCTGCGTTAAAGGACCGTCCG CTCCGTGAGCCCCACTCCTA
Product: thiamine-phosphate pyrophosphorylase
Products: NA
Alternate protein names: TMP pyrophosphorylase; TMP-PPase; Thiamine-phosphate synthase [H]
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MSERFADAFWPPADELAEAAERIRARLGDWPAGTTPWRLCVAAPDVPVDGDVLIVSAGDRAAQARASAASRPAAPDAVAI EFDEHGATLHAAGVRHALEAAHPLGDDWIAALAAFLDCGFAPIDALVLALAWRDGDETRGADAWPVDAARFPRVAGLAAA PEPAFPPCPAQLGLYPVVPDAEWVERVLDCGARTVQLRVKGAHPAALRGEIARAVAAGRRYPDARVFINDHWQIAVEEGA YGVHLGQEDLETADLAAIAHAGLRLGLSSHGYYEMLRALHERPSYLALGPVYATATKAVAAPPQGLARIARYARFAGARA PLVAIGGVGLDALPDVLATGVGSVAVVSAITGAIDYRAAVVALQQCFARQFDNH
Sequences:
>Translated_374_residues MSERFADAFWPPADELAEAAERIRARLGDWPAGTTPWRLCVAAPDVPVDGDVLIVSAGDRAAQARASAASRPAAPDAVAI EFDEHGATLHAAGVRHALEAAHPLGDDWIAALAAFLDCGFAPIDALVLALAWRDGDETRGADAWPVDAARFPRVAGLAAA PEPAFPPCPAQLGLYPVVPDAEWVERVLDCGARTVQLRVKGAHPAALRGEIARAVAAGRRYPDARVFINDHWQIAVEEGA YGVHLGQEDLETADLAAIAHAGLRLGLSSHGYYEMLRALHERPSYLALGPVYATATKAVAAPPQGLARIARYARFAGARA PLVAIGGVGLDALPDVLATGVGSVAVVSAITGAIDYRAAVVALQQCFARQFDNH >Mature_373_residues SERFADAFWPPADELAEAAERIRARLGDWPAGTTPWRLCVAAPDVPVDGDVLIVSAGDRAAQARASAASRPAAPDAVAIE FDEHGATLHAAGVRHALEAAHPLGDDWIAALAAFLDCGFAPIDALVLALAWRDGDETRGADAWPVDAARFPRVAGLAAAP EPAFPPCPAQLGLYPVVPDAEWVERVLDCGARTVQLRVKGAHPAALRGEIARAVAAGRRYPDARVFINDHWQIAVEEGAY GVHLGQEDLETADLAAIAHAGLRLGLSSHGYYEMLRALHERPSYLALGPVYATATKAVAAPPQGLARIARYARFAGARAP LVAIGGVGLDALPDVLATGVGSVAVVSAITGAIDYRAAVVALQQCFARQFDNH
Specific function: Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP) [H]
COG id: COG0352
COG function: function code H; Thiamine monophosphate synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TMP-PPase family [H]
Homologues:
Organism=Escherichia coli, GI1790426, Length=205, Percent_Identity=52.6829268292683, Blast_Score=203, Evalue=1e-53,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013785 - InterPro: IPR022998 - InterPro: IPR003733 [H]
Pfam domain/function: PF02581 TMP-TENI [H]
EC number: =2.5.1.3 [H]
Molecular weight: Translated: 39256; Mature: 39124
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSERFADAFWPPADELAEAAERIRARLGDWPAGTTPWRLCVAAPDVPVDGDVLIVSAGDR CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCH AAQARASAASRPAAPDAVAIEFDEHGATLHAAGVRHALEAAHPLGDDWIAALAAFLDCGF HHHHHHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC APIDALVLALAWRDGDETRGADAWPVDAARFPRVAGLAAAPEPAFPPCPAQLGLYPVVPD CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCCC AEWVERVLDCGARTVQLRVKGAHPAALRGEIARAVAAGRRYPDARVFINDHWQIAVEEGA HHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCC YGVHLGQEDLETADLAAIAHAGLRLGLSSHGYYEMLRALHERPSYLALGPVYATATKAVA EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHC APPQGLARIARYARFAGARAPLVAIGGVGLDALPDVLATGVGSVAVVSAITGAIDYRAAV CCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH VALQQCFARQFDNH HHHHHHHHHHHCCC >Mature Secondary Structure SERFADAFWPPADELAEAAERIRARLGDWPAGTTPWRLCVAAPDVPVDGDVLIVSAGDR CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCH AAQARASAASRPAAPDAVAIEFDEHGATLHAAGVRHALEAAHPLGDDWIAALAAFLDCGF HHHHHHHHCCCCCCCCEEEEEECCCCCEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC APIDALVLALAWRDGDETRGADAWPVDAARFPRVAGLAAAPEPAFPPCPAQLGLYPVVPD CHHHHHHHHHHHCCCCCCCCCCCCCCCHHHCCCHHCCCCCCCCCCCCCCHHCCCEECCCC AEWVERVLDCGARTVQLRVKGAHPAALRGEIARAVAAGRRYPDARVFINDHWQIAVEEGA HHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCEEEEEECCC YGVHLGQEDLETADLAAIAHAGLRLGLSSHGYYEMLRALHERPSYLALGPVYATATKAVA EEEECCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHC APPQGLARIARYARFAGARAPLVAIGGVGLDALPDVLATGVGSVAVVSAITGAIDYRAAV CCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH VALQQCFARQFDNH HHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA