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The map label for this gene is ydfH [C]

Identifier: 116249191

GI number: 116249191

Start: 572134

End: 572850

Strand: Direct

Name: ydfH [C]

Synonym: pRL120527

Alternate gene names: 116249191

Gene position: 572134-572850 (Clockwise)

Preceding gene: 116249190

Following gene: 116249192

Centisome position: 65.76

GC content: 59.0

Gene sequence:

>717_bases
ATGGCGAAGACACCGAAGAGCAATCTCTACGAAGATCTGAAACGGCAGATTTTGACGATGGAGCTGGATCCGGATGCCGA
TCTGGACGAGGCCAGTTTGAGCGAAAAGTACGGCCTCTCCCGGACGCCGGTCCGCGACATATTCCGTCGCCTTGCCGGTG
AGGGTTATATCGACATCCGCGAGAACAGGGGCGCGCGGGTCATCCCGATGAACCACTCCACCCTGCGAAATTTCTTTCTT
GTTGCGCCGATGATCTACGCGGCGATCGGCCGTCTCGCCGTGCAGAACTTCAAGCCTACTCAGCTTTCAGACCTGAAGCA
GACTCAGGAGCGGTTCCGCGCCGCGAGCGAGAACATGGACGTTCTGGCGATGGTCCTCGAGAACAATCGCTTTCACGAAA
TCTTCGGCGAGATGTCAGGCAACGTCTATCTGCAGCCGAGCCTGGGCCGGCTGCTCATCGACCACGCGCGCATCGGCCAC
ACCTTCTTCCGGCCGAGGAACGAGGACATGAAGCGGCGGCTTCAAGTGGCCGTTGGCCATCATGACAGCTTCATCGATGC
GCTCGGCGCTCACGACGAAAATGCAGTCGTCGACCTCGTCTTCGAACACTGGGAATTGTCCCGCGAGAACATGGAAATGT
TCATCGCCCCGCAAGGCCTCAAGGCGGACGCCTTCCTCGGCGGCCCCGCCACGCAATTATTGGAGAAATCGTCGTGA

Upstream 100 bases:

>100_bases
AAGAAATACTAATTGTGTACGCAGAGTACACAATTATTGACTCGTCACGGGAGGCGTGCCATCTTCACGGCGTAGAGCAA
CGAGCGGCCGGAGAGCGACG

Downstream 100 bases:

>100_bases
AGTTTGAGGGGATCTATACGCCGGCGGTGACGCCGCTCGACCAGAATGGTCAGATCGACAGGGCTGGATTTGCCGCCGTG
CTCGAATCGCTGATCGAGGC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Gntr Family; Transcriptional Regulator Protein; HTH-Type Transcriptional Regulator; GntR Domain-Containing Protein; Mn-Dependent Transcriptional Regulator; Transcriptional Regulatory Protein GntR Family; GntR-Like; Transcription Regulator Protein; FCD Domain Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Transcriptional Regulator GntR; Transcriptional Regulator YdhC; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MAKTPKSNLYEDLKRQILTMELDPDADLDEASLSEKYGLSRTPVRDIFRRLAGEGYIDIRENRGARVIPMNHSTLRNFFL
VAPMIYAAIGRLAVQNFKPTQLSDLKQTQERFRAASENMDVLAMVLENNRFHEIFGEMSGNVYLQPSLGRLLIDHARIGH
TFFRPRNEDMKRRLQVAVGHHDSFIDALGAHDENAVVDLVFEHWELSRENMEMFIAPQGLKADAFLGGPATQLLEKSS

Sequences:

>Translated_238_residues
MAKTPKSNLYEDLKRQILTMELDPDADLDEASLSEKYGLSRTPVRDIFRRLAGEGYIDIRENRGARVIPMNHSTLRNFFL
VAPMIYAAIGRLAVQNFKPTQLSDLKQTQERFRAASENMDVLAMVLENNRFHEIFGEMSGNVYLQPSLGRLLIDHARIGH
TFFRPRNEDMKRRLQVAVGHHDSFIDALGAHDENAVVDLVFEHWELSRENMEMFIAPQGLKADAFLGGPATQLLEKSS
>Mature_237_residues
AKTPKSNLYEDLKRQILTMELDPDADLDEASLSEKYGLSRTPVRDIFRRLAGEGYIDIRENRGARVIPMNHSTLRNFFLV
APMIYAAIGRLAVQNFKPTQLSDLKQTQERFRAASENMDVLAMVLENNRFHEIFGEMSGNVYLQPSLGRLLIDHARIGHT
FFRPRNEDMKRRLQVAVGHHDSFIDALGAHDENAVVDLVFEHWELSRENMEMFIAPQGLKADAFLGGPATQLLEKSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787821, Length=132, Percent_Identity=28.030303030303, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27114; Mature: 26983

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKTPKSNLYEDLKRQILTMELDPDADLDEASLSEKYGLSRTPVRDIFRRLAGEGYIDIR
CCCCCHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEE
ENRGARVIPMNHSTLRNFFLVAPMIYAAIGRLAVQNFKPTQLSDLKQTQERFRAASENMD
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
VLAMVLENNRFHEIFGEMSGNVYLQPSLGRLLIDHARIGHTFFRPRNEDMKRRLQVAVGH
EEEEECCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
HDSFIDALGAHDENAVVDLVFEHWELSRENMEMFIAPQGLKADAFLGGPATQLLEKSS
CHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEECCCCHHHHHCCCC
>Mature Secondary Structure 
AKTPKSNLYEDLKRQILTMELDPDADLDEASLSEKYGLSRTPVRDIFRRLAGEGYIDIR
CCCCHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCEEEEE
ENRGARVIPMNHSTLRNFFLVAPMIYAAIGRLAVQNFKPTQLSDLKQTQERFRAASENMD
CCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCC
VLAMVLENNRFHEIFGEMSGNVYLQPSLGRLLIDHARIGHTFFRPRNEDMKRRLQVAVGH
EEEEECCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
HDSFIDALGAHDENAVVDLVFEHWELSRENMEMFIAPQGLKADAFLGGPATQLLEKSS
CHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA